G51694


Basic Information

Item Value
gene id G51694
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 3686478 ~ 3699404 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU58893
GGCCTCACTGAGCCATCGGATTTTATCAAAAATATCTTAAATTGTGTTCCGAAGATGAACGAAGGCCTTATGCCATTAATTACTCACCCTCATGTTGTTCCACACCCATAATTTTCATTTTTGGGTGAACTAACCCTTTAATGTTTCTCTTTTACTACTGTTAATTTTTTTTTTTTTTTTCATTTATTTTGGACACTGTATTATTGTAATTGTCTCATATTAGTTTCACTTCAGACAATCTAATGTTTATTAGATACTGTACAAATGTTGCACTATTTCATACTAGATTTGTCCAGGTTACAGGCAATGGTTTCACTCACCAAGCCACTGAGCATAAACGCCCAACTACAGATGTGATGGTCCACTTAATTTGAGTGGAAACAAGCTTGACTTGTCTCAGGATGTCTCTAAAGTCTATTAATCATCATACAATCAGTGTTAAGTAGAATTTTAATCACAGTCACCTTGACTGGTTTTTCATGTTTAAAGTATCATCAGTTGTCTGATGATGGGTATTGAGAAAAATTGCTATCATGTCGTTCAAAAACCTCTATGACTTTCTTCTGTAAATCAAAAAAGATATTTTGAAGAACTGACTTCTACTGTATGGACAAAAACTGAGACATTTCTCAGAGTATCTTCTTTTATGTTCTACAGAAGAGAGTAAATCATACTGGCTTGGAACAATAAAAGTGAGTAAATGACAGAATTTTCATTTTTGGGTGAATTTTTGGGTAGTGTGCACAGAAAACCAAGAGACAGAAAGTTCCTTTCAGCAACTCCGTACAGATTGGCACACTTCTCTTTTAATAACAGAAACAGACTTAACCAACAGAAGCAGAATTTTCATTAGACATGCATAGTGATAACCAAACAATCCACCATAGAGAACACTACACTATCTCTTCAACACCTTCTAGACAGAGTTAAACAATGTGCTTGAGCTCATTTAACTTTTTGGTTTAGCTGATTTGTGGTTCAAATGAACCAACAATGTCTCCAAAAACTAGATTTGTTTTTTGGTCTTTTGTTACATTAACTGTTATATAAAATTAAGTAAATGCAAAATTCAGACTTCACTGCAATATTTACTCTTTCTACACAGAATAAATGACTGTAGAATACACTTTCACTGTTAAATAAAGAAATACAGAAATCAGTTTTCCATGTTGTTTATTTAATCATTGGTTTCAAAGAAATAAAAGTCACATTCAAAATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCTTTTACTTTTTTTTTTTAGATGTGTGGGTTTTTTGTTTTTGTTTTTTTTACAGAAAAAAAAAACCTGAATGGAAAGTTTATTGATGAGTACATTATTCTGCATCTGGTTGTTTGCGGTTGGAGCCTCATGTGCCAAACACAGCACCGCATCATCTGACTGCCAAGGAAAACGGAAGGAAGGAGGGAGAAAGAGGAAGGAAATGTGCAAACAAAAGAGGAGACGTAAGTGCTTAAAGAAATTTCTGGAGGGGAACAAAAATGGTCACGAAAAAAAACAAAAAAAAAACTGGATGGATTAGAGAATCATGGGTAAGTTAGAAGGAAAGCATGCATGGTTAAAGAACACAGAGCTTCATTCACCACACAGTGCTGTGACGGACAAGCATGTGAGCGCACAGATGGACCATCATACTGACAGATGGCTGGATGGGCAGCAATGATACACCACTTTTCTGTGCAAAACGATTGAGCGCTCATTCGATTGGATGAAATGGTCAGGTGATGGAAGCCACTCTCATCTCCATGGTGACAGAGCTGACCAATAGTGTGTATGAGGGATCAGTCTGCATTCTCTGTCCTGATGCAGTGGGGTGATGGTGCTGATGGTGTTGGTGAGGGGGAGTGCAGGGATCTGAAGTGGTTCTTTAGTTCTGCATCTGCTCGAAGAACTTGTAGGTGGGGTTCTCGTAGCCGTTCTGCTGCATTTTAGTGAGATGGCGTTCCTCAGGGGTCACTGC

Function

NR:

description
PREDICTED: gap junction delta-2 protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58893 True 1987 lncRNA 0.37 2 3686478 3699404

Neighbor

gene id symbol gene type direction distance location
CI01000009_03680266_03685634 NA coding upstream 823 3680266 ~ 3685655 (+)
CI01000009_03650884_03661357 TFDP1A, TFDP1 coding upstream 25121 3650884 ~ 3661357 (+)
CI01000009_03466999_03473248 SHOX, MOG-12 coding upstream 213064 3466853 ~ 3473414 (+)
CI01000009_03335503_03355421 NA coding upstream 331052 3335503 ~ 3355426 (+)
CI01000009_03330968_03333405 NA coding upstream 353025 3330585 ~ 3333453 (+)
CI01000009_03724620_03726787 NA coding downstream 24006 3723410 ~ 3727389 (+)
CI01000009_03760934_03761223 NA coding downstream 61530 3760934 ~ 3761839 (+)
CI01000009_03965885_03980591 NA coding downstream 266252 3965656 ~ 3981149 (+)
CI01000009_04168077_04171609 NA coding downstream 468673 4168077 ~ 4171609 (+)
CI01000009_04188754_04191658 RCAN1, RCAN1A coding downstream 488737 4188141 ~ 4192970 (+)
G51699 NA non-coding upstream 100 3686017 ~ 3686378 (+)
G51678 NA non-coding upstream 10406 3668710 ~ 3676072 (+)
G51685 NA non-coding upstream 40866 3645364 ~ 3645612 (+)
G51700 NA non-coding upstream 41576 3644203 ~ 3644902 (+)
G51688 NA non-coding upstream 42869 3643301 ~ 3643609 (+)
G51751 NA non-coding downstream 43560 3742964 ~ 3743261 (+)
G51752 NA non-coding downstream 43896 3743300 ~ 3743562 (+)
G51755 NA non-coding downstream 50220 3749624 ~ 3749945 (+)
G51764 NA non-coding downstream 68991 3768395 ~ 3768677 (+)
G51765 NA non-coding downstream 73347 3772751 ~ 3773011 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S other upstream 477494 3202207 ~ 3208984 (+)
G51529 NA other upstream 623891 3062033 ~ 3062587 (+)
G51274 NA other upstream 1335992 2255099 ~ 2350486 (+)
CI01000009_01897343_01919208 PIKFYVE other upstream 1785052 1897343 ~ 1919516 (+)
G51122 NA other upstream 2004512 1680146 ~ 1681966 (+)
G53388 NA other downstream 1822838 5522242 ~ 5540638 (+)
CI01000009_05931829_05943829 KCNH3 other downstream 2160898 5931718 ~ 5943899 (+)
G53651 NA other downstream 2546160 6245564 ~ 6248392 (+)
G56100 NA other downstream 5429896 9129300 ~ 9130286 (+)
CI01000009_09853929_09854476 SAP18 other downstream 6153955 9853929 ~ 9856587 (+)

Expression


Co-expression Network