G51688


Basic Information

Item Value
gene id G51688
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 3643301 ~ 3643609 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU58887
GACATGTCATCTGCAATCATGTTGCCGAAATCCAGAAGCAAGTTCCACGTGTCTTTGGGAATTGATCGTTTATGATGCTCCTGCGCAAAATAAGGGCAGAGACTAGAGAGCGTCTAAATTAATTGCTAAAGGAAATTATTCCACTATGTGGTTAATGTGTTGCGTAGCAGCCAGAAAACCCATTTTAATTTGTACTGAGCGCTAAAGAGGGTCAAAAGTCCAATGCTGTAATGACTTACCAATAAAAATCTGTTCCAGAGGTCTAGGAACTTAAAACGTCCAGCCAGAACCAGGTTCCAATATGCTACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58887 True 309 lncRNA 0.41 1 3643301 3643609

Neighbor

gene id symbol gene type direction distance location
CI01000009_03466999_03473248 SHOX, MOG-12 coding upstream 169887 3466853 ~ 3473414 (+)
CI01000009_03335503_03355421 NA coding upstream 287875 3335503 ~ 3355426 (+)
CI01000009_03330968_03333405 NA coding upstream 309848 3330585 ~ 3333453 (+)
CI01000009_03313112_03329470 MED14 coding upstream 313791 3313112 ~ 3329510 (+)
CI01000009_03301176_03305406 LAMP1 coding upstream 337706 3301176 ~ 3305595 (+)
CI01000009_03650884_03661357 TFDP1A, TFDP1 coding downstream 7275 3650884 ~ 3661357 (+)
CI01000009_03680266_03685634 NA coding downstream 36657 3680266 ~ 3685655 (+)
CI01000009_03689901_03697052 GABPA coding downstream 45721 3689330 ~ 3697470 (+)
CI01000009_03724620_03726787 NA coding downstream 79801 3723410 ~ 3727389 (+)
CI01000009_03760934_03761223 NA coding downstream 117325 3760934 ~ 3761839 (+)
G51676 NA non-coding upstream 191 3641220 ~ 3643110 (+)
G51695 NA non-coding upstream 30834 3612194 ~ 3612467 (+)
G51736 NA non-coding upstream 32024 3611078 ~ 3611277 (+)
G51735 NA non-coding upstream 32449 3610480 ~ 3610852 (+)
G51734 NA non-coding upstream 32827 3610235 ~ 3610474 (+)
G51700 NA non-coding downstream 594 3644203 ~ 3644902 (+)
G51685 NA non-coding downstream 1755 3645364 ~ 3645612 (+)
G51678 NA non-coding downstream 25101 3668710 ~ 3676072 (+)
G51699 NA non-coding downstream 42408 3686017 ~ 3686378 (+)
G51694 NA non-coding downstream 42869 3686478 ~ 3699404 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S other upstream 434317 3202207 ~ 3208984 (+)
G51529 NA other upstream 580714 3062033 ~ 3062587 (+)
G51274 NA other upstream 1292815 2255099 ~ 2350486 (+)
CI01000009_01897343_01919208 PIKFYVE other upstream 1741875 1897343 ~ 1919516 (+)
G51122 NA other upstream 1961335 1680146 ~ 1681966 (+)
G53388 NA other downstream 1878633 5522242 ~ 5540638 (+)
CI01000009_05931829_05943829 KCNH3 other downstream 2216693 5931718 ~ 5943899 (+)
G53651 NA other downstream 2601955 6245564 ~ 6248392 (+)
G56100 NA other downstream 5485691 9129300 ~ 9130286 (+)
CI01000009_09853929_09854476 SAP18 other downstream 6209750 9853929 ~ 9856587 (+)

Expression


Co-expression Network