CI01000009_03466999_03473248 (SHOX, MOG-12)


Basic Information

Item Value
gene id CI01000009_03466999_03473248
gene name SHOX, MOG-12
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 3466853 ~ 3473414 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_03466999_03473248.mRNA
GTATAAATAGTGTGATCTGAAAAACACAGACATAACAGCAGGAGTGATCTAAACCTTCTACACGCAAACATATCGCCGAAATCACTGTTGAGCAGACACAAAGATTCGCGTTAGATTCATTTTAAAGTGGATTTCCGTAATCAGCCATGGAAGAACTCACGGCGTTCGTGTCGAAATCCTTCGATCAGAAAAGCAAGGAGAGCAGCAAAGAGAGCATCACGTACAGGGAAGTTTTGGAGAGTGGTTTAGCCCGTGCCAGAGAGCTGGGAAACTCGGAGACCAGCCTTCAGGAGATTACAGAAACCAACAACAACCATTGTCCGGTACACCTTTACAAGGAGCACGTAGAGCTGGAAAAGGAGAAATTGAAGGAGTTTAACGTGACACGGGCTACTGACGGAATTTACGACTGCAAAGACAAGAAGGAGGATGTGAAATCAGAGGACGAGGACGCACAGAGTAAACTGAAGCAGAGACGGAGCAGGACAAATTTTACGTTAGAGCAGCTGAATGAACTGGAGCGCTTATTTGATGAGACGCATTACCCGGACGCCTTCATGCGGGAGGAGTTGAGTCAGAGGCTGGGGCTGTCTGAGGCCCGCGTGCAGAGGCGGAGGCGAAATCAGATTAAAAGAGGAGAGCAAAGAATAGGTATGGTTTCAGAACAGAAGAGCGAAATGCCGAAAACAGGAAAATCAAATGCACAAAGGAGTTATTTTGGGCACCGCGAGTCACTTGGACGCATGCAGGGTAGCTCCTTACGTGAATATGGGCGCACTCCGAATGCCATTTCAACAGGTCCAAGCTCAGTTACAGTTGGAGGGGGTCGGAACACACTCCCATCCTCATCTGCACCCACACCTCGCGGCCCACGCTCCCTATCTGATGTTCCCGCCCCCGCCCTTTGGATTACCGATCGCGTCGCTGGCAGACTCGGCCTCTGCGGCGGCCGCCGTGGTAGCGGCTGCCAAGAGCAATAGCAAGAACTCCAGCATCGCCGACCTGCGACTCAAGGCAAGAAAACACGCCGAGGCGCTGGGACTCTGACCCCCATGGGCTTCTCTGCTGCTCTGAACTGATAATTGCTTCTAACACAAGACTAAGCCTGTGAAAAGGCCGTGACACTCACAGTTAAAACAAAACAAA

Function

symbol description
shox Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and sequence-specific double-stranded DNA binding activity. Acts upstream of or within bone mineralization; cell population proliferation; and pectoral fin development. Predicted to be active in nucleus. Is expressed in several structures, including digestive system; nervous system; pericardial region; pharyngeal arch; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in Leri-Weill dyschondrosteosis and SHOX-related short stature. Orthologous to human SHOX (short stature homeobox).

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K09331 SHOX; short stature homeobox protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_03466999_03473248.mRNA True 1146 mRNA 0.51 6 3466853 3473414

Neighbor

gene id symbol gene type direction distance location
CI01000009_03335503_03355421 NA coding upstream 111427 3335503 ~ 3355426 (+)
CI01000009_03330968_03333405 NA coding upstream 133400 3330585 ~ 3333453 (+)
CI01000009_03313112_03329470 MED14 coding upstream 137343 3313112 ~ 3329510 (+)
CI01000009_03301176_03305406 LAMP1 coding upstream 161258 3301176 ~ 3305595 (+)
CI01000009_03276572_03283625 POU2F1B, POU2F1 coding upstream 182847 3276572 ~ 3284006 (+)
CI01000009_03650884_03661357 TFDP1A, TFDP1 coding downstream 177470 3650884 ~ 3661357 (+)
CI01000009_03680266_03685634 NA coding downstream 206852 3680266 ~ 3685655 (+)
CI01000009_03689901_03697052 GABPA coding downstream 215916 3689330 ~ 3697470 (+)
CI01000009_03724620_03726787 NA coding downstream 249996 3723410 ~ 3727389 (+)
CI01000009_03760934_03761223 NA coding downstream 287520 3760934 ~ 3761839 (+)
G51659 NA non-coding upstream 39080 3427566 ~ 3427773 (+)
G51639 NA non-coding upstream 155384 3310954 ~ 3311469 (+)
G51638 NA non-coding upstream 157316 3309078 ~ 3309537 (+)
G51637 NA non-coding upstream 158094 3308526 ~ 3308759 (+)
G51569 NA non-coding upstream 176043 3287328 ~ 3290810 (+)
G51673 NA non-coding downstream 121890 3595304 ~ 3599012 (+)
G51734 NA non-coding downstream 136821 3610235 ~ 3610474 (+)
G51735 NA non-coding downstream 137066 3610480 ~ 3610852 (+)
G51736 NA non-coding downstream 137664 3611078 ~ 3611277 (+)
G51695 NA non-coding downstream 138780 3612194 ~ 3612467 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S other upstream 257869 3202207 ~ 3208984 (+)
G51529 NA other upstream 404266 3062033 ~ 3062587 (+)
G51274 NA other upstream 1116367 2255099 ~ 2350486 (+)
CI01000009_01897343_01919208 PIKFYVE other upstream 1565427 1897343 ~ 1919516 (+)
G51122 NA other upstream 1784887 1680146 ~ 1681966 (+)
G53388 NA other downstream 2048828 5522242 ~ 5540638 (+)
CI01000009_05931829_05943829 KCNH3 other downstream 2386888 5931718 ~ 5943899 (+)
G53651 NA other downstream 2772150 6245564 ~ 6248392 (+)
G56100 NA other downstream 5655886 9129300 ~ 9130286 (+)
CI01000009_09853929_09854476 SAP18 other downstream 6379945 9853929 ~ 9856587 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_037292 shox coding NC_007120.7 CM002893.2 34641237 ~ 34647695 (+)
bowfin (Amia calva) AMCG00014689 shox,LOC102229599 coding CM030128.1 CM030128.1 27179103 ~ 27189518 (-)