CI01000009_03650884_03661357 (TFDP1A, TFDP1)


Basic Information

Item Value
gene id CI01000009_03650884_03661357
gene name TFDP1A, TFDP1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 3650884 ~ 3661357 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_03650884_03661357.mRNA
AGATGGGCTTCAGACCTCCTCTTCCTCTGTCCTCTTGCTAACTGGCTATGCCAACAAAAACAGCACCTAAGAAGGCAAAGGGCTTCAGGACTAGACGTTTTGTTGTGGAAATTTGGCTCAGGTTTTTCAGCTAGACCAAGCATCTATTCCTCAGCCCCAGGGATCATGGCCAAAGATGCTGGTCTGATTGAGGCCAATGGGGAGCTGAAGGTTTTCATCGATCAGAACTTGAGCCCTGGCAAAGGTGTGCTGTCTTTAGTAACGGTGCATCCTCAGTCAGTGACTGTTGGAAAACAGCTTTTGCCAAAAACACTGGGCCCTTCCAACGTGAACATCGCACCACATATGGTCATCAGCACACCTCAGAGGCCCAGTGGCTCCAATGTGATCCTAATGAACAGCCCACACACACCCAGCTCTCAGTTTATCACCCAGAGTCAACCATCGGAAGCCTCTCCGTGGTCCTCAGGGAAGAGGGGTAAGAAGGGGGAGAAGAATGGGAAAGGCCTCAGACATTTCTCCATGAAGGTTTGTGAGAAGGTCCAGCGGAAGGGTGTCACAACCTACAATGAGGTTGCTGATGAGCTTGTGGCTGAGTTCAGCTCTGGTGATAATCATATCTCCCCTAATGATGCGCATGTGTATGACCAGAAGAACATTCGACGGCGTGTGTACGATGCGCTCAATGTGCTGATGGCCATGAACATCATCTCCAAAGAAAAAAAGGAGATCAAATGGATTGGCCTGCCCACAAACTCTGCTCAGGAGTGCCAGAACCTGGAGGTGGAGAGGCAAAGGCGTTTGGAGAGAATCAAACAAAAACAGTCGCAACTTCAAGAACTCATTTTACAGCAAATTGCCTTCAAGAACCTTGTACAGCGGAACCGCCAGAGAGAACAACAGACGAAAAGACCCCCACCTGCCAACTCGGTCATTCACCTGCCATTTATCATCGTCAACACCAGCAAGAAAACAGTCATTGACTGCAGCATCTCCAATGACAAGTTTGAGTACCTCTTCAACTTTGATAGTATGTTTGAGATTCATGATGACATTGAGGTATTGAAGCGCATGGGCATGGCTTGTGGTCTAGAGGTGGGTAAGTGCTCTGCTGAGGACCTGAAGACTGCCAGGAGCTTGGTGCCCAAAGCACTGGAGCCCTATGTCACAGAAATGGCACAAGGGCCTATCAGTAATGTCTACATGACAGGGGCTTTGTCTGCTAACGGAGGACGCTATCATGTTGGGAGCGGCTCTCGAGTCGAGACCCCTGTCTCTTACATGGGCGAGGACGATGAGGATGATGATGAATTTGACACAAATGATGACGAGGACTAA

Function

symbol description
tfdp1a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to contribute to RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of cell cycle and regulation of transcription, DNA-templated. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Orthologous to several human genes including TFDP1 (transcription factor Dp-1).
tfdp1 Enables protein domain specific binding activity. Contributes to DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in positive regulation of G1/S transition of mitotic cell cycle; regulation of transcription, DNA-templated; and transcription by RNA polymerase II. Located in cytosol and nucleoplasm. Part of RNA polymerase II transcription regulator complex.

GO:

id name namespace
GO:0000278 mitotic cell cycle biological_process

KEGG:

id description
K04683 TFDP1; transcription factor Dp-1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_03650884_03661357.mRNA True 1338 mRNA 0.49 12 3650884 3661357

Neighbor

gene id symbol gene type direction distance location
CI01000009_03466999_03473248 SHOX, MOG-12 coding upstream 177470 3466853 ~ 3473414 (+)
CI01000009_03335503_03355421 NA coding upstream 295458 3335503 ~ 3355426 (+)
CI01000009_03330968_03333405 NA coding upstream 317431 3330585 ~ 3333453 (+)
CI01000009_03313112_03329470 MED14 coding upstream 321374 3313112 ~ 3329510 (+)
CI01000009_03301176_03305406 LAMP1 coding upstream 345289 3301176 ~ 3305595 (+)
CI01000009_03680266_03685634 NA coding downstream 18909 3680266 ~ 3685655 (+)
CI01000009_03689901_03697052 GABPA coding downstream 27973 3689330 ~ 3697470 (+)
CI01000009_03724620_03726787 NA coding downstream 62053 3723410 ~ 3727389 (+)
CI01000009_03760934_03761223 NA coding downstream 99577 3760934 ~ 3761839 (+)
CI01000009_03965885_03980591 NA coding downstream 304299 3965656 ~ 3981149 (+)
G51685 NA non-coding upstream 5272 3645364 ~ 3645612 (+)
G51700 NA non-coding upstream 5982 3644203 ~ 3644902 (+)
G51688 NA non-coding upstream 7275 3643301 ~ 3643609 (+)
G51676 NA non-coding upstream 7774 3641220 ~ 3643110 (+)
G51695 NA non-coding upstream 38417 3612194 ~ 3612467 (+)
G51678 NA non-coding downstream 7353 3668710 ~ 3676072 (+)
G51699 NA non-coding downstream 24660 3686017 ~ 3686378 (+)
G51694 NA non-coding downstream 25121 3686478 ~ 3699404 (+)
G51751 NA non-coding downstream 81607 3742964 ~ 3743261 (+)
G51752 NA non-coding downstream 81943 3743300 ~ 3743562 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S other upstream 441900 3202207 ~ 3208984 (+)
G51529 NA other upstream 588297 3062033 ~ 3062587 (+)
G51274 NA other upstream 1300398 2255099 ~ 2350486 (+)
CI01000009_01897343_01919208 PIKFYVE other upstream 1749458 1897343 ~ 1919516 (+)
G51122 NA other upstream 1968918 1680146 ~ 1681966 (+)
G53388 NA other downstream 1860885 5522242 ~ 5540638 (+)
CI01000009_05931829_05943829 KCNH3 other downstream 2198945 5931718 ~ 5943899 (+)
G53651 NA other downstream 2584207 6245564 ~ 6248392 (+)
G56100 NA other downstream 5467943 9129300 ~ 9130286 (+)
CI01000009_09853929_09854476 SAP18 other downstream 6192002 9853929 ~ 9856587 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location