Gene
RNA
| Item | Value |
|---|---|
| gene id | G51676 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000009 |
| NCBI id | null |
| chromosome length | 16003125 |
| location | 3641220 ~ 3643110 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU58874 | True | 1891 | lncRNA | 0.38 | 1 | 3641220 | 3643110 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000009_03466999_03473248 | SHOX, MOG-12 | coding | upstream | 167806 | 3466853 ~ 3473414 (+) |
| CI01000009_03335503_03355421 | NA | coding | upstream | 285794 | 3335503 ~ 3355426 (+) |
| CI01000009_03330968_03333405 | NA | coding | upstream | 307767 | 3330585 ~ 3333453 (+) |
| CI01000009_03313112_03329470 | MED14 | coding | upstream | 311710 | 3313112 ~ 3329510 (+) |
| CI01000009_03301176_03305406 | LAMP1 | coding | upstream | 335625 | 3301176 ~ 3305595 (+) |
| CI01000009_03650884_03661357 | TFDP1A, TFDP1 | coding | downstream | 7774 | 3650884 ~ 3661357 (+) |
| CI01000009_03680266_03685634 | NA | coding | downstream | 37156 | 3680266 ~ 3685655 (+) |
| CI01000009_03689901_03697052 | GABPA | coding | downstream | 46220 | 3689330 ~ 3697470 (+) |
| CI01000009_03724620_03726787 | NA | coding | downstream | 80300 | 3723410 ~ 3727389 (+) |
| CI01000009_03760934_03761223 | NA | coding | downstream | 117824 | 3760934 ~ 3761839 (+) |
| G51695 | NA | non-coding | upstream | 28753 | 3612194 ~ 3612467 (+) |
| G51736 | NA | non-coding | upstream | 29943 | 3611078 ~ 3611277 (+) |
| G51735 | NA | non-coding | upstream | 30368 | 3610480 ~ 3610852 (+) |
| G51734 | NA | non-coding | upstream | 30746 | 3610235 ~ 3610474 (+) |
| G51673 | NA | non-coding | upstream | 42208 | 3595304 ~ 3599012 (+) |
| G51688 | NA | non-coding | downstream | 191 | 3643301 ~ 3643609 (+) |
| G51700 | NA | non-coding | downstream | 1093 | 3644203 ~ 3644902 (+) |
| G51685 | NA | non-coding | downstream | 2254 | 3645364 ~ 3645612 (+) |
| G51678 | NA | non-coding | downstream | 25600 | 3668710 ~ 3676072 (+) |
| G51699 | NA | non-coding | downstream | 42907 | 3686017 ~ 3686378 (+) |
| CI01000009_03202999_03207060 | MPC2, MPC2.S | other | upstream | 432236 | 3202207 ~ 3208984 (+) |
| G51529 | NA | other | upstream | 578633 | 3062033 ~ 3062587 (+) |
| G51274 | NA | other | upstream | 1290734 | 2255099 ~ 2350486 (+) |
| CI01000009_01897343_01919208 | PIKFYVE | other | upstream | 1739794 | 1897343 ~ 1919516 (+) |
| G51122 | NA | other | upstream | 1959254 | 1680146 ~ 1681966 (+) |
| G53388 | NA | other | downstream | 1879132 | 5522242 ~ 5540638 (+) |
| CI01000009_05931829_05943829 | KCNH3 | other | downstream | 2217192 | 5931718 ~ 5943899 (+) |
| G53651 | NA | other | downstream | 2602454 | 6245564 ~ 6248392 (+) |
| G56100 | NA | other | downstream | 5486190 | 9129300 ~ 9130286 (+) |
| CI01000009_09853929_09854476 | SAP18 | other | downstream | 6210249 | 9853929 ~ 9856587 (+) |
