G51735


Basic Information

Item Value
gene id G51735
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 3610480 ~ 3610852 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU58939
GAAAACAGCGCCATCTTGTGGCAGGTAAAATTTACAGCAGCCATAAACCTGAGTGCGCAGCTCTGTTGTTTTATCCATTAAGCACAAATAAAAGCCTGACGACGCTAAATGTGTTTAGTTTTCTGATAATATAATTCACATATTAAAGTGTGGCAATAAATTAAATGTAAAAAAAAAAAAAAAAAAAAAAAGTTCTAGTTCTGTGCGGTCTGAGACGCGGGTTTCCGCATGTGCGCTTGAGATGAGCGCACACACAAATCTTCTCACTCGCGTCTTCTGGCTCTTCAATGTTTAAATTGGCAAGGGTTAAATGAGTTTAGTTTATACACAGATAGCAGCGTCATGTGCAGTACAGGTTTTACCTGCGCTGGCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58939 True 373 lncRNA 0.40 1 3610480 3610852

Neighbor

gene id symbol gene type direction distance location
CI01000009_03466999_03473248 SHOX, MOG-12 coding upstream 137066 3466853 ~ 3473414 (+)
CI01000009_03335503_03355421 NA coding upstream 255054 3335503 ~ 3355426 (+)
CI01000009_03330968_03333405 NA coding upstream 277027 3330585 ~ 3333453 (+)
CI01000009_03313112_03329470 MED14 coding upstream 280970 3313112 ~ 3329510 (+)
CI01000009_03301176_03305406 LAMP1 coding upstream 304885 3301176 ~ 3305595 (+)
CI01000009_03650884_03661357 TFDP1A, TFDP1 coding downstream 40032 3650884 ~ 3661357 (+)
CI01000009_03680266_03685634 NA coding downstream 69414 3680266 ~ 3685655 (+)
CI01000009_03689901_03697052 GABPA coding downstream 78478 3689330 ~ 3697470 (+)
CI01000009_03724620_03726787 NA coding downstream 112558 3723410 ~ 3727389 (+)
CI01000009_03760934_03761223 NA coding downstream 150082 3760934 ~ 3761839 (+)
G51734 NA non-coding upstream 6 3610235 ~ 3610474 (+)
G51673 NA non-coding upstream 11468 3595304 ~ 3599012 (+)
G51659 NA non-coding upstream 182707 3427566 ~ 3427773 (+)
G51639 NA non-coding upstream 299011 3310954 ~ 3311469 (+)
G51638 NA non-coding upstream 300943 3309078 ~ 3309537 (+)
G51736 NA non-coding downstream 226 3611078 ~ 3611277 (+)
G51695 NA non-coding downstream 1342 3612194 ~ 3612467 (+)
G51676 NA non-coding downstream 30368 3641220 ~ 3643110 (+)
G51688 NA non-coding downstream 32449 3643301 ~ 3643609 (+)
G51700 NA non-coding downstream 33351 3644203 ~ 3644902 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S other upstream 401496 3202207 ~ 3208984 (+)
G51529 NA other upstream 547893 3062033 ~ 3062587 (+)
G51274 NA other upstream 1259994 2255099 ~ 2350486 (+)
CI01000009_01897343_01919208 PIKFYVE other upstream 1709054 1897343 ~ 1919516 (+)
G51122 NA other upstream 1928514 1680146 ~ 1681966 (+)
G53388 NA other downstream 1911390 5522242 ~ 5540638 (+)
CI01000009_05931829_05943829 KCNH3 other downstream 2249450 5931718 ~ 5943899 (+)
G53651 NA other downstream 2634712 6245564 ~ 6248392 (+)
G56100 NA other downstream 5518448 9129300 ~ 9130286 (+)
CI01000009_09853929_09854476 SAP18 other downstream 6242507 9853929 ~ 9856587 (+)

Expression


Co-expression Network