G51840


Basic Information

Item Value
gene id G51840
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 3989626 ~ 3990638 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU59056
GTGAAGTATTAAACTACATTCTGCATATCATTATCTCCACTTTTCTGTAATGGTTTTAGCTGCCAGCTGCCAGTGTGTCACACCTTCTCTTACTTGCACCGAAGAAGTGGCCCTCCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACTCCTCCAGTACTGCCCTCTAAATAAGATTTGTAAAGGGTGTTAGCAGGCCTGCTGTGGCAGACAGACAGAGGGAAAGAATCCATGCTACCCTACATTATTAATCCTGTTTGTTCATGTACCTTTTCCTCTCACTAAGTAGCTCTCTGAAATGAGTAAACCAGGCGAGAGGGAAGTCTCCAGTCGCTGTGTTTTCCTTTCTTTATCCCTCCATCTTGTTCCCTGTCTAATTAGGCAACATTACGGACAGCACCTGTCTGAGCAGTGCAAATGAGGGCATGGGTTTATGCGCGCAGGTTATGGACATATGGAGGGTGGGAGAGCGGATGAGGTGAACACAGGGAAAACATCTGTGCAAGCAGAACCAGTCAGTAAATAGGACCGTGGTATAGTGAAGAGATGTCCATCAGGGGTTCTGTGGTGAAGTGGTTAAAGGTCAGTGGCCATTTACATGCAACTAATGGCTCGTTTTCACCAAGTGGTATGGTTCAGTTCAGTACAGTACAGTACAATTCAGGATAGTAAACCCTGATCCGACTTGCATTTCCACAGCCAACAATACCCTTACTTGATAGGCGTGGTGTATGCCGGAAAGTAGCGATCCACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU59056 True 759 lncRNA 0.47 2 3989626 3990638

Neighbor

gene id symbol gene type direction distance location
CI01000009_03965885_03980591 NA coding upstream 8477 3965656 ~ 3981149 (+)
CI01000009_03760934_03761223 NA coding upstream 227787 3760934 ~ 3761839 (+)
CI01000009_03724620_03726787 NA coding upstream 262237 3723410 ~ 3727389 (+)
CI01000009_03689901_03697052 GABPA coding upstream 292156 3689330 ~ 3697470 (+)
CI01000009_03680266_03685634 NA coding upstream 303971 3680266 ~ 3685655 (+)
CI01000009_04168077_04171609 NA coding downstream 177439 4168077 ~ 4171609 (+)
CI01000009_04188754_04191658 RCAN1, RCAN1A coding downstream 197503 4188141 ~ 4192970 (+)
CI01000009_04193380_04194878 NA coding downstream 202742 4193380 ~ 4194902 (+)
CI01000009_04199761_04203673 MAB21L3 coding downstream 208741 4199379 ~ 4203895 (+)
CI01000009_04218049_04229604 ATP1A1A.4, ATP1A1B, ATP1A1, ATP1A1A.1 coding downstream 227411 4218049 ~ 4229790 (+)
G51792 NA non-coding upstream 119140 3868800 ~ 3870486 (+)
G51761 NA non-coding upstream 193636 3790691 ~ 3795990 (+)
G51769 NA non-coding upstream 201556 3787837 ~ 3788070 (+)
G51768 NA non-coding upstream 210747 3778606 ~ 3778879 (+)
G51766 NA non-coding upstream 215735 3773653 ~ 3773891 (+)
G51853 NA non-coding downstream 42962 4033600 ~ 4033823 (+)
G51857 NA non-coding downstream 57190 4047828 ~ 4048327 (+)
G52772 NA non-coding downstream 72710 4063348 ~ 4063569 (+)
G52795 NA non-coding downstream 162796 4153434 ~ 4153652 (+)
G52877 NA non-coding downstream 290724 4281362 ~ 4281809 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S other upstream 780642 3202207 ~ 3208984 (+)
G51529 NA other upstream 927039 3062033 ~ 3062587 (+)
G51274 NA other upstream 1639140 2255099 ~ 2350486 (+)
CI01000009_01897343_01919208 PIKFYVE other upstream 2088200 1897343 ~ 1919516 (+)
G51122 NA other upstream 2307660 1680146 ~ 1681966 (+)
G53388 NA other downstream 1531604 5522242 ~ 5540638 (+)
CI01000009_05931829_05943829 KCNH3 other downstream 1869664 5931718 ~ 5943899 (+)
G53651 NA other downstream 2254926 6245564 ~ 6248392 (+)
G56100 NA other downstream 5138662 9129300 ~ 9130286 (+)
CI01000009_09853929_09854476 SAP18 other downstream 5862721 9853929 ~ 9856587 (+)

Expression


Co-expression Network