G54964


Basic Information

Item Value
gene id G54964
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 7237307 ~ 7237514 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU62534
CAAACATATGACATGGAAATATTGGATATAAAAGTCAGGGGGGTGAATTATGGGAGTTAAAAAAAAAAAGAAAAAAAGACTGGTGTAAAATTCAGGCCAGTCTGTCATTACCTCAAGCTTTTACAGCAATACCTTTCAGCTTGGGTTTTGGGTGAGAGCTGAAAGGCTGAAGTTGACAGATTTAGTTTACTGGTACACTGGCTTTCCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU62534 True 208 lncRNA 0.38 1 7237307 7237514

Neighbor

gene id symbol gene type direction distance location
CI01000009_07111833_07115320 NA coding upstream 121885 7110351 ~ 7115443 (+)
CI01000009_07101768_07105835 NA coding upstream 131298 7101269 ~ 7106009 (+)
CI01000009_07091022_07092696 NA coding upstream 144506 7090918 ~ 7092801 (+)
CI01000009_07051811_07054331 NA coding upstream 182682 7050718 ~ 7054625 (+)
CI01000009_06975071_07009147 ARHGAP15 coding upstream 227890 6975071 ~ 7009417 (+)
CI01000009_07316335_07346664 ACVR2A, ACVR2AA coding downstream 78821 7316335 ~ 7346664 (+)
CI01000009_07361747_07377615 EPC2 coding downstream 124233 7361747 ~ 7378451 (+)
CI01000009_07392574_07395739 MED4.S, MED4 coding downstream 154967 7392481 ~ 7395770 (+)
CI01000009_07440170_07459782 HTR2A, HTR2AA coding downstream 202525 7440039 ~ 7460409 (+)
CI01000009_07490344_07493862 ESTD, ESD coding downstream 252734 7490248 ~ 7493862 (+)
G54957 NA non-coding upstream 8731 7227451 ~ 7228576 (+)
G54958 NA non-coding upstream 10220 7225141 ~ 7227087 (+)
G54952 NA non-coding upstream 25657 7211402 ~ 7211650 (+)
G54946 NA non-coding upstream 35380 7201690 ~ 7201927 (+)
G54779 NA non-coding upstream 80149 7156881 ~ 7157158 (+)
G54992 NA non-coding downstream 52082 7289596 ~ 7289853 (+)
G54999 NA non-coding downstream 58509 7296023 ~ 7296275 (+)
G55013 NA non-coding downstream 166561 7404075 ~ 7404335 (+)
G55009 NA non-coding downstream 226614 7464128 ~ 7464458 (+)
G55030 NA non-coding downstream 246704 7484218 ~ 7484503 (+)
G53651 NA other upstream 988915 6245564 ~ 6248392 (+)
CI01000009_05931829_05943829 KCNH3 other upstream 1304506 5931718 ~ 5943899 (+)
G53388 NA other upstream 1698253 5522242 ~ 5540638 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S other upstream 4028323 3202207 ~ 3208984 (+)
G51529 NA other upstream 4174720 3062033 ~ 3062587 (+)
G56100 NA other downstream 1891786 9129300 ~ 9130286 (+)
CI01000009_09853929_09854476 SAP18 other downstream 2615845 9853929 ~ 9856587 (+)
CI01000009_11761868_11765848 ORMDL1.S, ORMDL1 other downstream 4523272 11761606 ~ 11766944 (+)
G57811 NA other downstream 4696428 11933942 ~ 11935251 (+)
CI01000009_12432736_12435509 NA other downstream 5195044 12432538 ~ 12436017 (+)

Expression


Co-expression Network