G16343


Basic Information

Item Value
gene id G16343
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 3911062 ~ 3989550 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU22125
TGTCAGGATCAGactttaaataatgcaaagaaaacaagttcatattcataaagtttaagagttcaaaaatcaatatttggtggaataaccctggcattttctcctccaccagtcttacacactacttttggataactttatgccactcctggtgcaaaaatccaaacagtaattagagtttttttcatttggtaaactcaaagaaagtcattatttttaagtggtctcttattttttttccagaatttaTATGATTCAGCACAGTTTGTGTGCAATACAATTATATGTGCATGGTTTGAGGTGAAAATATTTCTCAAACCAATACTAAGGACCTCCAAATGCTTCAGATTTTGTTCCAGATTGCAACATAAATGTGTGGACTGGGTGTCTGGGTTTACAAATTGCTGTTCATTTAGACCATCATTCTATATTTAACGATTCTAGGATTgattgtcttatttttttttttacagaaaaatgtCAATAGCAGTGTTGCAAACTAATTGTTTCTATTTGCAACCAACCAGCCTAGTTTTGATTAGCTACAACATTTTCCATCTAGCTTATAGAGATAACTCAACACCTGTCTGATCAATGATTTCTTATGTTCTCGTTGggttaaatcttttttttttttttttttgcctgcatTGTGTAAAGCTAATCTAACCTCCAATGGTAGCTCAAGAAAAATGCATTTGTGGACAGAGCATGAGTGCAAATGTAATTCAAAGCTCCAGAAATAAATTTAGATCATCTTAAATtacaaaatatcaaaacataaacaaataactgATAAACTAGCTTCCATTTGCGTTCACTGGAAGATAAATGTGCAGCAGGTTCCGTGGACGCTGGCTGCAGACCGGATCATATTGATCCATCCCCtttatttcatttgattttGGGACACTGAGTGACATGTACTTGTCATGTACATTGATGGTGGATGGCCCTCTTCTACATTAGGTATCAGTGACAGAGCTATAGAACATACCCTTAAACAGATTGTAAGGTTTTGAGTGTGACACCGTTATGGTTCTTTCACTTGTCTTGATGCATGATTGTAAATGTCCTGCTGACCCGTTTGTAAGAAGACAATCCTACTGTTATGTGTGCTCTTTGTAAAAATGCTGTAGGCACATGCTTCGCTGAATAAAATCAAATGTAAGAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU22125 True 1175 lncRNA 0.38 4 3911062 3989550

Neighbor

gene id symbol gene type direction distance location
tmem132e tmem132e,LOC107691770,LOC107689377 coding upstream 128051 3614740 ~ 3783011 (+)
LOC103038960 dtx2,LOC107600799,LOC107691768,LOC108260301,LOC107689380,LOC107709752 coding upstream 1025754 2868786 ~ 2885308 (+)
gtf2ird1 gtf2ird1,LOC107600764 coding upstream 1043071 2836700 ~ 2867991 (+)
clip2 clip2,LOC107709754,LOC107744329 coding upstream 1076506 2780166 ~ 2834556 (+)
LOC103040420 rasa4,LOC108428505,LOC108260369,LOC107561580,LOC107744328,LOC107709756,LOC107691765 coding upstream 1135989 2729294 ~ 2775073 (+)
LOC103022138 LOC108428416,LOC108260357,LOC107714896,LOC107691814,LOC107572424 coding downstream 8879 3998429 ~ 4087460 (+)
LOC111191780 NA coding downstream 130934 4120484 ~ 4122075 (+)
LOC103036617 rcbtb2 coding downstream 730873 4720423 ~ 4735653 (+)
LOC103034847 LOC108426960 coding downstream 760903 4750453 ~ 4753398 (+)
cog6 cog6,LOC107699813,LOC107670561 coding downstream 972364 4961914 ~ 5030716 (+)
LOC111194589 NA non-coding upstream 564400 3277514 ~ 3346662 (+)
G16241 NA non-coding upstream 663276 3242898 ~ 3247786 (+)
G16239 NA non-coding upstream 669475 3241384 ~ 3241587 (+)
G16237 NA non-coding upstream 706769 3203954 ~ 3204293 (+)
G16229 NA non-coding upstream 709742 3191560 ~ 3201320 (+)
G16399 NA non-coding downstream 127592 4117142 ~ 4117476 (+)
G16400 NA non-coding downstream 129022 4118572 ~ 4118795 (+)
G16410 NA non-coding downstream 535178 4524728 ~ 4526329 (+)
G16414 LOC107833664 non-coding downstream 545421 4534971 ~ 4535236 (+)
G16430 NA non-coding downstream 565765 4555315 ~ 4555551 (+)
nrgn NA other upstream 1739855 2150630 ~ 2171207 (+)
G15839 NA other upstream 2229040 1681159 ~ 1682022 (+)
fdxacb1 fdxacb1 other upstream 2381645 1516497 ~ 1529417 (+)
LOC103025578 NA other upstream 2570262 1322516 ~ 1340800 (+)
LOC103031762 gnb2,LOC108428986,LOC107663406,LOC105023919 other upstream 3789881 70784 ~ 121181 (+)
LOC103038305 NA other downstream 526447 4515997 ~ 4517309 (+)
LOC103025913 NA other downstream 2179210 6168760 ~ 6177884 (+)
G16820 NA other downstream 2542846 6532396 ~ 6532868 (+)
LOC103032995 NA other downstream 3433021 7422571 ~ 7429391 (+)
LOC103041197 NA other downstream 4179289 8168839 ~ 8184837 (+)

Expression


Co-expression Network