LOC103036617 (rcbtb2)


Basic Information

Item Value
gene id LOC103036617
gene name rcbtb2
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 4720423 ~ 4735653 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007236723.3
ACCTGTTAAGAAGACAAGGCTACTGCTTTAGTGATGTGAATGGGGCTCCTCTGATAGAAGCACAGTTCTCAGTGAGTCCCAAGCTGGTTTTACTCTTTAGTTGAACTTTagctaggtaactagctaacgaACATCTCCAGAAGCGAGCAGAGCGTCTCCTGCATGATGTCAGCTGTGTGAAAAACATGCCTCTCCTCTCATCATCCGCTGTGAAATGAAGGACTGATTCAGCGGGCAGGAGAATGACAGCAGCCGGCTAGCTGCTGAAAACTCCCTGGAATTATCGGACCACTTTCCTTTGAACGAGCCTGGATTTGTGAATGGAAACGAACCTGAACAAATACATTAAAGCACCCTGTGGCTGAAAGCGCCGGCGTTCATTTTATAACACGAGAGTAGCATGCTAGACGTGggaaagtggccagtgtttgcACTTCTGCCTCCTGAGGAACTGCGACTCATCCGCCAGGCCTGCGTGTTTGGCAGTGCTGCTAATGAGGCGCTTTACGTTACTGTCAATGATGAGGTGTTCGCTCTGGGGACGAACTGCAGCGGCTGTTTGGGTCTGGGGGACATGCAGAGCACCATTGAGGCCAGGCGGATAGATTCCCTGTGTGGAAAGAAGATTGTATCTCTCAGCTATGGCACAGGACCACATGTGGTCATTGCAACTGCAGAAGGAGAGGTCTTTGCGTGGGGCCACAACGGCTACAGCCAGCTGGGGAATGGGACCACAAACCATGGCCTGACCCCTGCCCTGGTCTCCACCAACCTTATTAGCAAGAGAGTGACAGAAGTTGCTTGTGGGTCCCATCACACCATCGCACTTACCACTGAAGGAGAGGTGTTTGCTTGGGGCTACAACAACTCTGGCCAGGTGGGTTCAGGCTCCACAGCCAACCAGCCAACCCCACGGAGAGTCAGCAGCTGCCTTCAGAACAAGGTGGTGGTCAACATTGCCTGCGGACAGCTCTGCTCCATGGCTGTCCTGGACAACGGAGAGACCTACGGCTGGGGCTATAACTGTAACGGACAGCTGGGTTTGGGCAATAATGGCAACCAGCAAACACCATGCCGTATCGCCGCTCTGCAGGGAGTCAACATTGTACAGGTGGCCTGTGGCTATGCACATACACTGGCACTAACAGATGAGGGATTTGTTTACGCCTGGGGTGCCAACTCTTATGGGCAACTAGGCACTGGAAACAAGAGCAATCAAGCATTACCCACACTCATCAACACGGACAAGGAGAGAATGGTGGAAGTAGCAGCATGTCACACCAGCCACACGTCAGCTGCCAAGACGCAGAGCGGCCAGGTTCTGATGTGGGGTCAGTGTCGCGGTCAGGCTGTTTCCTGCCCACACATCACGCACTTCTCCAGCACTGATGACGTGTTTGCCTGCTTTGCCACCCCAGCCGTCACCTGGCGTCTTCTCACTGTGGATGGAGATGACTATCTCACTGTGGCCCAATCCCTCAAAAGAGAGTTTGACAGCCCAGAAATCTCAGACCTGAAGTTCCTTGTTGATGGGAAGTGCATCCATGTTCACAAAGCTCTGCTCAAAATCAggtgTGAGCATTTCCGAGCACTGTTGAATGAAACTGATGAGGAGGCCATAGAGATCCATCAGTTCTCCTACCTGGTGTACCGAGCCTTCCTGGAGTACCTCTACACAGACACAATCAACTTGCCACCTGAGGATGCCATTgGTCTTCTGGATCTTGCTACCTACTACAGAGAAACCCGCCTAAAGAGGTTGTGCCAGGAGACCATCAAAAGAGGCATTTCAGAAGAGAATGCAATCACACTGCTGTCTGCTGCTGTCAAGTATGAAGCCCGGgaTCTAGAAGAGTTTTGTTTCAAATTCTGCGTCAACCACCTGACCGCTGTCACGCAGACACAGGCCTTCGTCGACATGGACCATGACCTGCTGAAGACCTTCATTAGCAAAGCCAGTCGCTATGGGGCCTTTAAAAACTGAAAGAGCCGGACCAGGTGAGAGGGAAATCTATACAGAACAGCACTGGGCTGGCTTTTCCAGAACCACACAGAATATTTTATAAAGATATGAATGATTGATATGAAATGAACATTCTTGGTTTGAATGCGAAAATCACggaggaacaaaaaaaatctgtaaactgGCTGTCCAGTAGGCCCCAGTGTTTTAAAAGCTTCACTCCCACAATGAGACCAAAATGAatccaagaaaaaaaagggcTAAAGAGTTGAAGGCCTCTCAGTTAGGGAAGccaaaaatagtacaaaagggACATGGATGTGGGCTTGATCTGTGAGGACCTCTGCACTTCACAAAGGTATTTCATGGTTGCTATTAAAGGGATTAATGACTTTTATTAAGGGAAGAACATTCCactggtgcagagaagcagacaaAGTCTAATGTGACTTTCCATGAGCATCACCACACTATATAGGTGCGTGGTTTCCAACATCTAAaggaacatgtttttttctccagcaGTAGAGAAAAGCAATGAAAGAGAAtgaaaagaatggcaaatgccTGCACTGAAAGTAGCCATGGGTTTGAGTAGGAATGTTGTCACTCTTTATAGAACTGACAAGGATGTGTTTAAAGTagaattaaatgcattttattgtaCCGATATCGATACATCTGTaatacaaaatgtaatttggaggatttttttttttggtttagctTCTTCAGATTGCTTTACTTGTTACAGTTTAAGATGAATTATATCcttcataaaatttaaatatatttgttttatgttcATAACAACTTCTGGAGAGCTTAATCATGATGAGATAATGGTGCAAACATCTGAAATAGCCTCTGTAAGGTTATTATTGTTTACGTTTGAGTTAGCGAGGATTTAACCACCACTAACCACGTAGCACTAAAGCTAATTGCTGTTATAATggagttacatttttttttattttccttttcttttgttGAGATGCgccatgttatttttttcaaattattgaGTTTGACCTACCAAAAGCCATGAGACAGGAACTACTATGGTTTGGGGTcttctgcattaaatgtggatgtgatctCTGCCAGAGTTACTTCAAGCCAGATGCGGCCGCTCATGATCTTCCATGACAGACATTGCTGGTGCAAATGTGAATGTTTAATGCCTTCACAACTTCAAAACTGGAATATACCATTCCTCTGAAACCCATAGTCAGGCTTCCGAACTCCCGAAAGTTCATGTgtccttgccatgagcacgctggccagtgttcagacAGACTTACAAGATAATACTTGACCATTTACACATCTCCTAAGGTAACAcatcatgatcaatttacaaactgctgtcccattacttttggcatCTCTGTATTTTCTAATTCTAATCTTTTTCATTACTAGCAGTAACATGGTTATTCTTTGctaatttgtacattttaatgttttgcaccattttgttgttttatatgtCAGAACAGTCAGTATTTGAGGCTTGTGTATTACCGTTATTTTGCACctgttaatgttttatatgCACTATAATCACTCCTTTTATAATGGACTGTGGAGAATATGGAGATAAGATATGAATCTGTAGGTCGTGTTTACATTGGAAAGAGATAAGAGCCGTGTGTGCTCTTTGGGTTACTTATTAACTGTTTGGGAGCAGCTGAAACAGTTGCTCATATAATGTTTAGTTACTGAAAGGAAGTccttatttagaatttttaagaCTACCTTAGCACATTCTGTTACTCTGGAATAATTAGAAGATTACATAATCGGCGTAGTTTGTGTAAATAAAACTATGTATTGTGAAAGTTATGTCTTACAGTACGTGTTCACTAGCATTTAGGCCTCAATGCAGGCcttcaatggagagagccgccgCATGCAgaactcaactttattcaaatgaaccCAGCCGCagcgctgcgtccagccaatcggAGAACAGCAGGCTGCGACGTCACACACATaccagcctcacacacacaaatgggcctttcaaccacggaagagaatctaaaaaaaaatggcagaatatgaatttatagaactatagattaTAGTGAggttgatttaaaaatgtaaaatctaaaatttaTGACTGCctacttctgttgcttcatttgaattataAAAGGTCATGAACACGCCCACAAGGAGAGCCGAGAGATTTTGCACAGCAGAATACGTTGAAGAAAAGTGCTAGTGGACACGTATAGTTATCTTAACATCCTCAGCTGCCCCATTTTAATCTGAACTGAGCATGAACATTAACTGAAATTATCAAAGATATTAAGAGAGTGAAGTTCTTAAGTATTTGGACAATTACATCCATATTCACAAAGTCCTTTCAATTTCagagctgaaaaaaatgaataaattaatataatttaaacaataatttatttttttttaacacttgaaTGCGTATACATCATGAATTAACAAAGAAACATGGCACTTTTGGACATGAAACATCTAATCAGACAAGACAACGGACCCTGAAAAATGTGGCTGTAATTTCTGAGAGGGTAATGAACTTAAACTTTGCacctttgcatctttttttggttTACAAGGACAGAATCATGAAAATGGTATTGTCCAAATACTTATTTACTATAAGTTACGTTAAGTTTTCAGCGGTTTTGTTTACAGTTAAGTTCTTGCCTTCACCTCTAAGGGCAAGAACTTAGTTACACGATTTCTCCTAAAATGgatttatagttttgttttttttgtttttttttaaccccaGTAATGATCAGTTAGTCAATAGCTTACTGGCACTGTTGTTCCAGTCGGTTGACAAGAAATTGTATGCTGACTCCCATTGTCGAAACACTCAAACCCATACTGACAACAGCTTCTTTATGTCACACTGGAAAATAATCTGTTGTACTGTTACACTCAATGTTGAAATAAAAATTCTGAAATTAC
>XM_007236724.3
AGAGACCTGTTAAGAAGACAAGGCTACTGCTTTAGTGATGTGAATGGGGCTCCTCTGATAGAAGCACAGTTCTCAGTGAGTCCCAAGCTGGTTTTACTCTTTAGTTGAACTTTagctaggtaactagctaacgaACATCTCCAGAAGCGAGCAGAGCGTCTCCTGCATGATGTCAGCTGTGTGAAAAACATGCCTCTCCTCTCATCATCCGCTGTGAAATGAAGGACTGATTCAGCGGGCAGGAGAATGACAGCAGCCGGCTAGCTGCTGAAAACTCCCTGGAATTATCGGACCACTTTCCTTTGAACGAGCCTGGATTTGTGAATGGAAACGAACCTGAACAAATACATTAAAGCACCCTGTGGCTGAAAGCGCCGGCGTTCATTTTATAACACGAGCATGCTAGACGTGggaaagtggccagtgtttgcACTTCTGCCTCCTGAGGAACTGCGACTCATCCGCCAGGCCTGCGTGTTTGGCAGTGCTGCTAATGAGGCGCTTTACGTTACTGTCAATGATGAGGTGTTCGCTCTGGGGACGAACTGCAGCGGCTGTTTGGGTCTGGGGGACATGCAGAGCACCATTGAGGCCAGGCGGATAGATTCCCTGTGTGGAAAGAAGATTGTATCTCTCAGCTATGGCACAGGACCACATGTGGTCATTGCAACTGCAGAAGGAGAGGTCTTTGCGTGGGGCCACAACGGCTACAGCCAGCTGGGGAATGGGACCACAAACCATGGCCTGACCCCTGCCCTGGTCTCCACCAACCTTATTAGCAAGAGAGTGACAGAAGTTGCTTGTGGGTCCCATCACACCATCGCACTTACCACTGAAGGAGAGGTGTTTGCTTGGGGCTACAACAACTCTGGCCAGGTGGGTTCAGGCTCCACAGCCAACCAGCCAACCCCACGGAGAGTCAGCAGCTGCCTTCAGAACAAGGTGGTGGTCAACATTGCCTGCGGACAGCTCTGCTCCATGGCTGTCCTGGACAACGGAGAGACCTACGGCTGGGGCTATAACTGTAACGGACAGCTGGGTTTGGGCAATAATGGCAACCAGCAAACACCATGCCGTATCGCCGCTCTGCAGGGAGTCAACATTGTACAGGTGGCCTGTGGCTATGCACATACACTGGCACTAACAGATGAGGGATTTGTTTACGCCTGGGGTGCCAACTCTTATGGGCAACTAGGCACTGGAAACAAGAGCAATCAAGCATTACCCACACTCATCAACACGGACAAGGAGAGAATGGTGGAAGTAGCAGCATGTCACACCAGCCACACGTCAGCTGCCAAGACGCAGAGCGGCCAGGTTCTGATGTGGGGTCAGTGTCGCGGTCAGGCTGTTTCCTGCCCACACATCACGCACTTCTCCAGCACTGATGACGTGTTTGCCTGCTTTGCCACCCCAGCCGTCACCTGGCGTCTTCTCACTGTGGATGGAGATGACTATCTCACTGTGGCCCAATCCCTCAAAAGAGAGTTTGACAGCCCAGAAATCTCAGACCTGAAGTTCCTTGTTGATGGGAAGTGCATCCATGTTCACAAAGCTCTGCTCAAAATCAggtgTGAGCATTTCCGAGCACTGTTGAATGAAACTGATGAGGAGGCCATAGAGATCCATCAGTTCTCCTACCTGGTGTACCGAGCCTTCCTGGAGTACCTCTACACAGACACAATCAACTTGCCACCTGAGGATGCCATTgGTCTTCTGGATCTTGCTACCTACTACAGAGAAACCCGCCTAAAGAGGTTGTGCCAGGAGACCATCAAAAGAGGCATTTCAGAAGAGAATGCAATCACACTGCTGTCTGCTGCTGTCAAGTATGAAGCCCGGgaTCTAGAAGAGTTTTGTTTCAAATTCTGCGTCAACCACCTGACCGCTGTCACGCAGACACAGGCCTTCGTCGACATGGACCATGACCTGCTGAAGACCTTCATTAGCAAAGCCAGTCGCTATGGGGCCTTTAAAAACTGAAAGAGCCGGACCAGGTGAGAGGGAAATCTATACAGAACAGCACTGGGCTGGCTTTTCCAGAACCACACAGAATATTTTATAAAGATATGAATGATTGATATGAAATGAACATTCTTGGTTTGAATGCGAAAATCACggaggaacaaaaaaaatctgtaaactgGCTGTCCAGTAGGCCCCAGTGTTTTAAAAGCTTCACTCCCACAATGAGACCAAAATGAatccaagaaaaaaaagggcTAAAGAGTTGAAGGCCTCTCAGTTAGGGAAGccaaaaatagtacaaaagggACATGGATGTGGGCTTGATCTGTGAGGACCTCTGCACTTCACAAAGGTATTTCATGGTTGCTATTAAAGGGATTAATGACTTTTATTAAGGGAAGAACATTCCactggtgcagagaagcagacaaAGTCTAATGTGACTTTCCATGAGCATCACCACACTATATAGGTGCGTGGTTTCCAACATCTAAaggaacatgtttttttctccagcaGTAGAGAAAAGCAATGAAAGAGAAtgaaaagaatggcaaatgccTGCACTGAAAGTAGCCATGGGTTTGAGTAGGAATGTTGTCACTCTTTATAGAACTGACAAGGATGTGTTTAAAGTagaattaaatgcattttattgtaCCGATATCGATACATCTGTaatacaaaatgtaatttggaggatttttttttttggtttagctTCTTCAGATTGCTTTACTTGTTACAGTTTAAGATGAATTATATCcttcataaaatttaaatatatttgttttatgttcATAACAACTTCTGGAGAGCTTAATCATGATGAGATAATGGTGCAAACATCTGAAATAGCCTCTGTAAGGTTATTATTGTTTACGTTTGAGTTAGCGAGGATTTAACCACCACTAACCACGTAGCACTAAAGCTAATTGCTGTTATAATggagttacatttttttttattttccttttcttttgttGAGATGCgccatgttatttttttcaaattattgaGTTTGACCTACCAAAAGCCATGAGACAGGAACTACTATGGTTTGGGGTcttctgcattaaatgtggatgtgatctCTGCCAGAGTTACTTCAAGCCAGATGCGGCCGCTCATGATCTTCCATGACAGACATTGCTGGTGCAAATGTGAATGTTTAATGCCTTCACAACTTCAAAACTGGAATATACCATTCCTCTGAAACCCATAGTCAGGCTTCCGAACTCCCGAAAGTTCATGTgtccttgccatgagcacgctggccagtgttcagacAGACTTACAAGATAATACTTGACCATTTACACATCTCCTAAGGTAACAcatcatgatcaatttacaaactgctgtcccattacttttggcatCTCTGTATTTTCTAATTCTAATCTTTTTCATTACTAGCAGTAACATGGTTATTCTTTGctaatttgtacattttaatgttttgcaccattttgttgttttatatgtCAGAACAGTCAGTATTTGAGGCTTGTGTATTACCGTTATTTTGCACctgttaatgttttatatgCACTATAATCACTCCTTTTATAATGGACTGTGGAGAATATGGAGATAAGATATGAATCTGTAGGTCGTGTTTACATTGGAAAGAGATAAGAGCCGTGTGTGCTCTTTGGGTTACTTATTAACTGTTTGGGAGCAGCTGAAACAGTTGCTCATATAATGTTTAGTTACTGAAAGGAAGTccttatttagaatttttaagaCTACCTTAGCACATTCTGTTACTCTGGAATAATTAGAAGATTACATAATCGGCGTAGTTTGTGTAAATAAAACTATGTATTGTGAAAGTTATGTCTTACAGTACGTGTTCACTAGCATTTAGGCCTCAATGCAGGCcttcaatggagagagccgccgCATGCAgaactcaactttattcaaatgaaccCAGCCGCagcgctgcgtccagccaatcggAGAACAGCAGGCTGCGACGTCACACACATaccagcctcacacacacaaatgggcctttcaaccacggaagagaatctaaaaaaaaatggcagaatatgaatttatagaactatagattaTAGTGAggttgatttaaaaatgtaaaatctaaaatttaTGACTGCctacttctgttgcttcatttgaattataAAAGGTCATGAACACGCCCACAAGGAGAGCCGAGAGATTTTGCACAGCAGAATACGTTGAAGAAAAGTGCTAGTGGACACGTATAGTTATCTTAACATCCTCAGCTGCCCCATTTTAATCTGAACTGAGCATGAACATTAACTGAAATTATCAAAGATATTAAGAGAGTGAAGTTCTTAAGTATTTGGACAATTACATCCATATTCACAAAGTCCTTTCAATTTCagagctgaaaaaaatgaataaattaatataatttaaacaataatttatttttttttaacacttgaaTGCGTATACATCATGAATTAACAAAGAAACATGGCACTTTTGGACATGAAACATCTAATCAGACAAGACAACGGACCCTGAAAAATGTGGCTGTAATTTCTGAGAGGGTAATGAACTTAAACTTTGCacctttgcatctttttttggttTACAAGGACAGAATCATGAAAATGGTATTGTCCAAATACTTATTTACTATAAGTTACGTTAAGTTTTCAGCGGTTTTGTTTACAGTTAAGTTCTTGCCTTCACCTCTAAGGGCAAGAACTTAGTTACACGATTTCTCCTAAAATGgatttatagttttgttttttttgtttttttttaaccccaGTAATGATCAGTTAGTCAATAGCTTACTGGCACTGTTGTTCCAGTCGGTTGACAAGAAATTGTATGCTGACTCCCATTGTCGAAACACTCAAACCCATACTGACAACAGCTTCTTTATGTCACACTGGAAAATAATCTGTTGTACTGTTACACTCAATGTTGAAATAAAAATTCTGAAATTAC

Function

symbol description
rcbtb2 Orthologous to human RCBTB2 (RCC1 and BTB domain containing protein 2).

NR:

description
PREDICTED: RCC1 and BTB domain-containing protein 2 isoform X1

GO: NA

KEGG:

id description
K11494 RCBTB; RCC1 and BTB domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007236723.3 True 4936 mRNA 0.43 12 4720427 4735653
XM_007236724.3 False 4935 mRNA 0.43 12 4720423 4735653

Neighbor

gene id symbol gene type direction distance location
LOC111191780 NA coding upstream 598348 4120484 ~ 4122075 (+)
LOC103022138 LOC108428416,LOC108260357,LOC107714896,LOC107691814,LOC107572424 coding upstream 632963 3998429 ~ 4087460 (+)
tmem248 tmem248 coding upstream 732984 3976558 ~ 3987439 (+)
lig3 lig3,LOC107691772,LOC107710722,LOC107689374 coding upstream 751198 3950349 ~ 3969225 (+)
tmem132e tmem132e,LOC107691770,LOC107689377 coding upstream 937412 3614740 ~ 3783011 (+)
LOC103034847 LOC108426960 coding downstream 14800 4750453 ~ 4753398 (+)
cog6 cog6,LOC107699813,LOC107670561 coding downstream 226261 4961914 ~ 5030716 (+)
LOC103032405 slc25a15,slc25a15a,LOC107561472,LOC107670691,LOC107593465 coding downstream 450844 5186497 ~ 5195523 (+)
LOC103032089 stoml3,LOC102781741,LOC105011208,LOC108236983 coding downstream 463038 5198691 ~ 5208963 (+)
znf804b NA coding downstream 705041 5440694 ~ 5664643 (+)
G16439 LOC108426957,LOC107740387,LOC107593468 non-coding upstream 114430 4603567 ~ 4605993 (+)
G16431 NA non-coding upstream 160389 4557270 ~ 4560034 (+)
G16430 NA non-coding upstream 164872 4555315 ~ 4555551 (+)
G16414 LOC107833664 non-coding upstream 185187 4534971 ~ 4535236 (+)
G16410 NA non-coding upstream 194094 4524728 ~ 4526329 (+)
G16465 NA non-coding downstream 9746 4745399 ~ 4745685 (+)
G16466 NA non-coding downstream 10464 4746117 ~ 4747513 (+)
G16530 NA non-coding downstream 387914 5123567 ~ 5129032 (+)
G16633 NA non-coding downstream 529048 5264701 ~ 5264995 (+)
G16643 NA non-coding downstream 580113 5315766 ~ 5315971 (+)
LOC103038305 NA other upstream 203114 4515997 ~ 4517309 (+)
nrgn NA other upstream 2549216 2150630 ~ 2171207 (+)
G15839 NA other upstream 3038401 1681159 ~ 1682022 (+)
fdxacb1 fdxacb1 other upstream 3191006 1516497 ~ 1529417 (+)
LOC103025578 NA other upstream 3379623 1322516 ~ 1340800 (+)
LOC103025913 NA other downstream 1433107 6168760 ~ 6177884 (+)
G16820 NA other downstream 1796743 6532396 ~ 6532868 (+)
LOC103032995 NA other downstream 2686918 7422571 ~ 7429391 (+)
LOC103041197 NA other downstream 3433186 8168839 ~ 8184837 (+)
G17414 NA other downstream 3939966 8675619 ~ 8716787 (+)

Expression


Co-expression Network