G16439 (LOC108426957,LOC107740387,LOC107593468)


Basic Information

Item Value
gene id G16439
gene name LOC108426957,LOC107740387,LOC107593468
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 4603567 ~ 4605993 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU22242
TTTCTGATCTCATAACGAACATTTTAAGTGATATGTATGTATAGTATAACAAATTTTTCATTTTGGAATGTACGGTGTATGAGGTAACTGCAAacattaaaattacataaaatggtcatgtttttgtgcatattttcttgattttttttgtcattttttttccttctccctTGAACCAAATGTAGAAGCCTACTAATGGTGGGGGAGATGTTAAAATGGCACACTttgcaattacatttttttttttcactatcaaAAATAGGTAttttgatttctttatttttttttccttcagtgACAAAGAGAAGACAATTGCAGACTATCTATTAGACCAAATCATAAAATTCACCCAAGACTTCTTGCAAGGTACCTGTAGTTCTTAATGGTAGCGACAGCACCGTTGCCATAACCAAGCACGACACTAGACCCCACGGCCAGATTGTCACACTGCCACAATGCAGCGCTGGCAATCAGTCACAATGACTTAACACAGAGAAAAGGCAAATAATTTCGATTCACAGGAAGTACATGTAGAGTCAACACATCGTATCAATTAATCACtgctttttgcttttgatttaacatgtttttctttgtttccctGGAGATGGATAACTCTGATGCTgtacttaaatataaaataaactttaaatatgcAATTTGATCAAGGAAATTAACAAACAACCAAAAGAATGAATATTTGAGAATATACTCTACATAATAATCTGGATTAACCTAATTTTCTATAcatcgaaaaaaaaaatatattgctataagtaaacaatataatttgtgttattaaacctaaataaacaaaaaaatcaaacgaAAAAGTAATAAACTgagagaaattaagaaaatactAGGCAGAACAACTTGTTGATTCAAATCACGAGTCAAATCAgcatcattttgaaataaaacgATTTCAATAACACTAATTTTGTGGTACTACAATTTAACATCCAAAACACAAGAAGGGCTTGCACAATCAGAGAATGTGTTCCATAAAACGTATCACAAGACGCAttcagtattgttttttttttttttcgttcacTAAGGTGCAAAAATAACGACTCAAGGAAAGATTCAGATAAGCATACATTGTTTGTGCTGAACAATATTTTGGAGCAAAGCAGCTGTATGATTGTAAAATCAAGCTACAGTATACTTACATGATAGTAAAAATAACCTTTAACTGTGTtaggtttctgttttttttttttctccaccccTCTTCCCTATAcccaccaccccccacccccagtCATTGTCCTAACCCTATACCAATCCATTCTTAAAATGAACAGGTCCTTGCATCATACTGTACAAAAATATACTACCATTTCTCTAGTCATTTTTGCATCCCTACACATTCTGCACATCAAAAAAGTTTTGACGAAAGTGCTAAATGAATGTTCTATAACGTGAACAAGCATATTCACcgcccacctcctcctcctcttagACTACTACATCTCCCAGGAAAGGCTCGGTCCCTTTGAGGCTTCAGCCTTCTCCCATGTGCTTGCAGGACAGAGATTCCTCCCCCTCCTGCCGACCTGCACACTGTATTCACTGGCCTTCTGAGTCCCAAGCAAACCAGTGAACACTGCCATCACGAAGCTAGCTTTGGAACACAGATCAAGTGTCACATACTGGACAAATTAACAAATCAtcataaaaactgaaaatataaatatgaggaAAATCTCCAGCTACACATGTAATTAAGGGTAAAATTAGTATGTGACAAGCAGTAAGCTTCAGTCCTAATCCTTCAATAACCACCTCTCAGCTAAAACCAGAGGAACACTTCTTTCCAACAGCgcagcagagagaaagaatggatcgacagcagagaaaaagagaagagaagagtcaAAAAGATCAGTCGGCAAAATTAGACCTACAGCCTCGGCTTGCTTTCTTCATCCTTTCCCTTCCACACGTCTCCCTCAAACAACGCTGGTGCCAAGAAAGAAACATACCGGAAACGaaaaaaaaacaaacaaatacaaaacgaaaaaaaaaagaaagaaaaaagatcgAACCATAAAATGTTCCGAATCCCGCCTCACGCCTTTAAGGGGGCTTACTCGATGACAAAGTACTGGATGGCGACAGCGATGAGAATGGAAGTGACTGCCAGGAGGGCAATAATGAGAAAAGAGAACTGTTCGTCCGACAGGCTCCGTCTGGGCCGCTGGATCTCGGCAGCTTTAGGCCCtgtggaggtggaggtgctGGGGGATTCGATGCGAGGGGGCAGCAGAGTGACGGTCGAGCTGTAGGGTCCGATGATCTCTGGAGCATCCTGGCACTGGCGAATGCCGCAGACTCGGAAGCGGTACTCAGCGGACGAGCTCAGACTGGGCAGCTGGAATACAGTGGCTGAGCCCTT

Function

NR:

description
PREDICTED: fibronectin type-III domain-containing protein 3a-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU22242 True 2407 lncRNA 0.28 2 4603567 4605993

Neighbor

gene id symbol gene type direction distance location
LOC111191780 NA coding upstream 481492 4120484 ~ 4122075 (+)
LOC103022138 LOC108428416,LOC108260357,LOC107714896,LOC107691814,LOC107572424 coding upstream 516107 3998429 ~ 4087460 (+)
tmem248 tmem248 coding upstream 616128 3976558 ~ 3987439 (+)
lig3 lig3,LOC107691772,LOC107710722,LOC107689374 coding upstream 634342 3950349 ~ 3969225 (+)
tmem132e tmem132e,LOC107691770,LOC107689377 coding upstream 820556 3614740 ~ 3783011 (+)
LOC103036617 rcbtb2 coding downstream 114430 4720423 ~ 4735653 (+)
LOC103034847 LOC108426960 coding downstream 144460 4750453 ~ 4753398 (+)
cog6 cog6,LOC107699813,LOC107670561 coding downstream 355921 4961914 ~ 5030716 (+)
LOC103032405 slc25a15,slc25a15a,LOC107561472,LOC107670691,LOC107593465 coding downstream 580504 5186497 ~ 5195523 (+)
LOC103032089 stoml3,LOC102781741,LOC105011208,LOC108236983 coding downstream 592698 5198691 ~ 5208963 (+)
G16431 NA non-coding upstream 43533 4557270 ~ 4560034 (+)
G16430 NA non-coding upstream 48016 4555315 ~ 4555551 (+)
G16414 LOC107833664 non-coding upstream 68331 4534971 ~ 4535236 (+)
G16410 NA non-coding upstream 77238 4524728 ~ 4526329 (+)
G16400 NA non-coding upstream 484772 4118572 ~ 4118795 (+)
G16465 NA non-coding downstream 139406 4745399 ~ 4745685 (+)
G16466 NA non-coding downstream 140124 4746117 ~ 4747513 (+)
G16530 NA non-coding downstream 517574 5123567 ~ 5129032 (+)
G16633 NA non-coding downstream 658708 5264701 ~ 5264995 (+)
G16643 NA non-coding downstream 709773 5315766 ~ 5315971 (+)
LOC103038305 NA other upstream 86258 4515997 ~ 4517309 (+)
nrgn NA other upstream 2432360 2150630 ~ 2171207 (+)
G15839 NA other upstream 2921545 1681159 ~ 1682022 (+)
fdxacb1 fdxacb1 other upstream 3074150 1516497 ~ 1529417 (+)
LOC103025578 NA other upstream 3262767 1322516 ~ 1340800 (+)
LOC103025913 NA other downstream 1562767 6168760 ~ 6177884 (+)
G16820 NA other downstream 1926403 6532396 ~ 6532868 (+)
LOC103032995 NA other downstream 2816578 7422571 ~ 7429391 (+)
LOC103041197 NA other downstream 3562846 8168839 ~ 8184837 (+)
G17414 NA other downstream 4069626 8675619 ~ 8716787 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000092_00156990_00162891 MLNR coding CI01000092 null 156990 ~ 162891 (-)