LOC103032089 (stoml3,LOC102781741,LOC105011208,LOC108236983)


Basic Information

Item Value
gene id LOC103032089
gene name stoml3,LOC102781741,LOC105011208,LOC108236983
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 5198691 ~ 5208963 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007236707.3
TTTAAAGCTCTCCTGTTACATGATCTCTCACACCCCAAGGCAACTGCTCCACAGACCTATAGAGATGACAACAGTGGATATGATGAGCAACAGCAAGATCGACAGACAGACAATGAACAGACAATCACCATCCGGGAGCATCCAACCAATCTTACATGATGAGGAACCTCGCTCTTTGGGTTTCTGTGGCTGGTTGTTCATCATCATCTCCATCATTTTCACCATCTCATTGCTTCCTATCACCATATTTATGTGCATCAAGATTGTGCAGGAATATGAAAGAGCTGTGATCTTTCGCTTGGGTCGCATCCTGGACAGAAAACCAAAAGGGCCAGGGATGTTTTTCTTGCTGCCCTGCACTGATACTATGACAAAGGTGGACTTGAGAGCAAAGTCATTTGACATTCCACCTCAAGAGATTCTGACAAAGGACTCAGTGACAGTGTGCGTGGATGGTGTGGTTTACTTCCGAGTCAGTGATCCCATCATGTCTGTGGCTAATGTGGTGAATGCAGACATGTCCACTCGCCTGCTGGCCCAGACCACCCTGAGGAACGTCCTGGGTACTAAAAGCCTGGCTGAAGTCCTGTCTGATAGAGAGAGCATCTCCCACAACATGCAGATTTCTCTGGACGAGGCCACACATCCATGGGGCATCAAGGTGGAGCGTGTGGAGATTAAGGACGTCAAACTCCCTCAGCAGCTCCAGAGAGCCATGGCGGCAGAGGCAGAAGCCTCTAGAGAGGCCCGTGCAAAGgtGATTGCAGCAGAGGGGGAGATGAATGCCTCTCGGGCTCTAAAGGAGGCGTCTATGGTGATTGCTGAGTCACCTTCTGCCCTGCAGCTCCGCTACCTCCAAACACTCAACACCATCGCTTCTGAAAAGAACTCCACCATCATCTTCCCTCTACCCATGGACATGCTACAGCCCTTCTTGACCAGAAAATGATTTTAGAAGTCTGCAAGTTGTCAGTGTTGCTTTGTTTtgataaagtttaaaatataatgctatagacattcagtttttttctgttagAAGAATGATTCAGTGAAGAATCaaatttattggtgtcagaaaTTTGCATCATTCTATAGCAATAGAACTACAAGGCAACCTTTGTAAACCTTCAGGAATTAAATTACCAGAGATGTTGTATACCTCCATACAAGAAAACTGTaaagatcttttttttacttcaaaatattatttatttttcctgttaAAATTGAAGATTGTTATATTTCTCTATGAATTGTATATTGCATTTTGCATTTCTTGTCAATTGCTTTTGCCCTCAAAATGAGACAAAACACATTGCAATTTATTAACACTATTTAATACAGCATTATTATTACACAATCTTCAAATCCCATCAAAGTTTTCCGCTAAAGTTTAAGTCCGAGGGCTGTAACAGCCACTCAAGAATCTTCCAGGACTTCTTCTGAAACCAAACCTAGGCCCAATGATGACCAAGCTTCAGTTTCCTAACAGAAGACATGATTTTTTCTTATCGGATGTCTTGATAATGTCTGCCCCAGAGAATCACTGATTCACTGCGATGCAAACTAGGCAGAGTGTTCTTTTTAGTTTATGCTTCATTCCTCCCTAaacattttcagttttatttcaaAGCTCCAGAAGAAGCTGATAAAAATGCTTGACCAGAAACTGCAGTAGTGGTTAAAAGTAGCATTGTGTGTTGAATTTTGAAAATTCTTActgcaaaagttttttttttttttttgcttataaaCATAATGGGTGTTAAATAATTTTGAGTGCAGCTgtagatttttatatattttcatgctTTAATGGTTTTGTTCACTGGGACCTAATGTCTTTTAGATTTTTCCTTTTGGACTCTGTTTTTGGTTTTGACTTTCCTTTTCTATCTTATTATGAGCgacataaaaatgtatgtaactcacttttaataaaagtaaGAAGCAGTAATACACTCAGCTATTACAACATAAACTGAA

Function

symbol description
stoml3 Predicted to act upstream of or within signal transduction. Predicted to be located in cilium and membrane raft. Predicted to be integral component of membrane. Predicted to be active in plasma membrane.

NR:

description
PREDICTED: stomatin-like protein 3

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K17286 STOM; erythrocyte band 7 integral membrane protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007236707.3 True 1986 mRNA 0.40 7 5198691 5208963

Neighbor

gene id symbol gene type direction distance location
LOC103032405 slc25a15,slc25a15a,LOC107561472,LOC107670691,LOC107593465 coding upstream 3168 5186497 ~ 5195523 (+)
cog6 cog6,LOC107699813,LOC107670561 coding upstream 167975 4961914 ~ 5030716 (+)
LOC103034847 LOC108426960 coding upstream 445293 4750453 ~ 4753398 (+)
LOC103036617 rcbtb2 coding upstream 463038 4720423 ~ 4735653 (+)
LOC111191780 NA coding upstream 1076616 4120484 ~ 4122075 (+)
znf804b NA coding downstream 231731 5440694 ~ 5664643 (+)
tbrg4 NA coding downstream 803827 6012790 ~ 6032743 (+)
LOC103023602 LOC107579097 coding downstream 840434 6049397 ~ 6080051 (+)
tex10 tex10,LOC107706105,LOC107689903 coding downstream 976518 6185481 ~ 6229459 (+)
erp44 erp44,LOC107593692,LOC107723539,LOC107706132 coding downstream 1084109 6293072 ~ 6323895 (+)
G16530 NA non-coding upstream 69659 5123567 ~ 5129032 (+)
G16466 NA non-coding upstream 451178 4746117 ~ 4747513 (+)
G16465 NA non-coding upstream 453006 4745399 ~ 4745685 (+)
G16439 LOC108426957,LOC107740387,LOC107593468 non-coding upstream 592698 4603567 ~ 4605993 (+)
G16431 NA non-coding upstream 638657 4557270 ~ 4560034 (+)
G16633 NA non-coding downstream 55738 5264701 ~ 5264995 (+)
G16643 NA non-coding downstream 106803 5315766 ~ 5315971 (+)
G16648 NA non-coding downstream 135137 5344100 ~ 5345911 (+)
G16654 NA non-coding downstream 138940 5347903 ~ 5348124 (+)
LOC111194746 NA non-coding downstream 141661 5350624 ~ 5370348 (+)
LOC103038305 NA other upstream 681382 4515997 ~ 4517309 (+)
nrgn NA other upstream 3027484 2150630 ~ 2171207 (+)
G15839 NA other upstream 3516669 1681159 ~ 1682022 (+)
fdxacb1 fdxacb1 other upstream 3669274 1516497 ~ 1529417 (+)
LOC103025578 NA other upstream 3857891 1322516 ~ 1340800 (+)
LOC103025913 NA other downstream 959797 6168760 ~ 6177884 (+)
G16820 NA other downstream 1323433 6532396 ~ 6532868 (+)
LOC103032995 NA other downstream 2213608 7422571 ~ 7429391 (+)
LOC103041197 NA other downstream 2959876 8168839 ~ 8184837 (+)
G17414 NA other downstream 3466656 8675619 ~ 8716787 (+)

Expression


Co-expression Network