CI01000010_00841791_00854049 (UCKL1A, UCKL1B, UCKL1)


Basic Information

Item Value
gene id CI01000010_00841791_00854049
gene name UCKL1A, UCKL1B, UCKL1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 841791 ~ 854239 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000010_00841791_00854049.mRNA
AACTGATCCTCTTATTCGGTCAAGCCCACATACTGAGTGAGCCAGTATCCAGACACAAAGAAAAGTTGTTTTTCTATTCATTAAAAGGTTTCTTGAAGACATTAGTGGTCAAAACCTCAAGGGTTTCTCTGCTTAAAAAGAAGCAGATTCCTGTGTTGAATCTGCAGATCTGGTCTTTTCTTAAAGCAGGCATGTGCTTTTGCCAGTGCATTAGGAGCGCTGGTTTATCTGTGTTGGGCTGTTTGAGCTTCAATGAGAATGTGACCTTTATTGCTTATATGGAAGACAGCCATCAGGCTTTCTCAGATGATATGAGTACACTGCCCGGATACACAGGGGCCAGAATATCAGGCTGCTGGTCTCTCCGTACAGATGGAGGTGGGAGTGGTGAAGATTCTCTGGACAGGCTCCTCCCCCCGGTCAGCACCTCTCGCAGGAAGAGCAGCACTCTGGGTAAAACAGAACCTCCACTGCTCCGCACCGGCACACGTACCATCTACATAGCCGGCAGACCGCCCTGGTACAACGAACATGGAGCCCAGTTTAAAGAGGCCTTTGTCATTGGTCTGTGTGGAGGCAGTGCCTCTGGAAAAACTACTGTAGCCAATAAAATCATTGAAGCTTTGGACGTTCCTTGGGTTGTTCTACTATCTATGGACTCGTTTTATAAGGTTCTGTCTCCAGAGGAACAAGCTCTAGCGGCCAATAACGACTATAACTTTGACCATCCGGGAGCTTTCGACTTTGAGCTGCTTGTGACTACACTGCGGAAACTTAAACAGGGGAAAAGTGTAAAAATCCCAGTGTATGACTTCACTACACATGGACGCCAGAAAGACTGGAAAAATGTCTATGGTGCCAGCGTCATTATCTTTGAAGGCATCTTGTCCTTTGCAGACAAAGAGCTCTTGCAGCTGATGGACATGAAGATTTTTGTAGATACAGATTCGGATATTCGGCTGGTACGGCGGCTGAGGAGGGACATCACAGAGAGAGGACGTGACATTGAGGGTGTGATTAAACAATACAATAAGTTTGTAAAACCAGCTTTTGAGCAGTACATAGAACCAACCATGCGACTTGCAGATATTGTTGTGCCACGTGGTGGGGGTAACATGGTGGCCATTGACCTGATCGTTCAGCATGTTCACAGCCAGCTAGAAGAAGTGAGTGCAAATGTGTCCTGTGAACTAATCTTATCCATTGTTCCAGCAAAAGAGAAGTTGTGCACCTATTTTTTTGGTCACATTGTGCTGATTTGCTTTATATCTCTTCTCTTTCATATGCACACGCACACACAGGGCACTCCTGGCCACGGCCCATCAGTCCCAGCCGTTGCCTCAGACTCTCAGTGTGTTAGAAAGCACTCCACAGGTTCGAGGTCTCCACACCATCATCAGGCCTGTACCATCCAAACACCACAAGGTCAAGAGTATAAGGGCCACAGATTTAGTGGGAAAGGGATCACAGGTGTGTCCGTTCTTCGGGCAGGTGAGACCATGGAGCCTGCACTGAGAGCCGTGTGCAAAGATGTCCGTATTGGGAAGATTCTGATCCAGACTAATCTGGATTCAGGAGAACCAGAGCTGCACTACCTGCGACTGCCCAGAGACATCAGTGAGGACCATGTGATTTTGATGGATAGCACCGTTTCTACCGGAGCTGCAGCCATGATGGCACTGAGGGTGTTGCTGGACCATGATGTCCAGGAAGACAAGATCGTGTTGGTGTCTCTGCTGATGGCGGAGCTGGGAGTTCACTCAGTTGCTTACGCCTTCCCTCGTGTCAAAATCATCACCACTGCTGTGGACAAGAGCCTAGATGACCTTCTTCATGTCATCCCAGGGATAGGGGACTTTGGTGACCGTTACTTTGGGACAGATGGATCTTCATCATGGATTGATGAAGAACAGCAAGAACCACTTAGCTGCTCATCAGAGGTTTGACACTTTGTTTAAACAATTCAGGCAGTTGTGACTAGTGAGGATCAACACTTAATGTAATTTCATAAAGCCAGCCAGGAACAAAAATAGTTTTGCCTAACACACTCATGAGGCACAGTATTTTGTAGTACTTTATTTTATAACCGTATGTTCATGATGTGGTCTAAAACATTAAAATGTCTTTTACCTATAA

Function

symbol description
uckl1a Predicted to enable ATP binding activity and uridine kinase activity. Predicted to be involved in CTP salvage and UMP salvage. Predicted to act upstream of or within nucleoside metabolic process and phosphorylation. Predicted to be active in cytoplasm. Orthologous to human UCKL1 (uridine-cytidine kinase 1 like 1).
uckl1b Predicted to enable ATP binding activity and uridine kinase activity. Predicted to be involved in CTP salvage and UMP salvage. Predicted to act upstream of or within nucleoside metabolic process and phosphorylation. Predicted to be active in cytoplasm. Orthologous to human UCKL1 (uridine-cytidine kinase 1 like 1).
uckl1 Predicted to enable uridine kinase activity. Predicted to be involved in pyrimidine nucleoside salvage. Predicted to be located in cytosol. Predicted to be active in cytoplasm.

NR:

description
LOC558466 protein, partial

GO:

id name namespace
GO:0044211 CTP salvage biological_process

KEGG:

id description
K00876 udk, UCK; uridine kinase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000010_00841791_00854049.mRNA True 2136 mRNA 0.47 14 841791 854239

Neighbor

gene id symbol gene type direction distance location
CI01000010_00826648_00831638 NA coding upstream 9086 826648 ~ 832705 (+)
CI01000010_00808732_00810151 NA coding upstream 31460 808732 ~ 810331 (+)
CI01000010_00797362_00800297 SYP, SYPA coding upstream 41490 797362 ~ 800301 (+)
CI01000010_00746445_00783522 CACNA1FB, CACNA1F coding upstream 58269 746445 ~ 783522 (+)
CI01000010_00588108_00595271 PDZD4 coding upstream 246329 587629 ~ 595462 (+)
CI01000010_00881905_00883563 NA coding downstream 26956 881195 ~ 883684 (+)
CI01000010_00886120_00889930 NA coding downstream 31652 885891 ~ 889959 (+)
CI01000010_00892258_00898466 YTHDF1 coding downstream 38019 892258 ~ 898554 (+)
CI01000010_00907286_00907804 NA coding downstream 52823 907062 ~ 907881 (+)
CI01000010_00910595_00911893 MGC83062, GID8, GID8.L, CT011, GID8A, GID8B coding downstream 56356 910595 ~ 911946 (+)
G60817 NA non-coding upstream 52365 788888 ~ 789426 (+)
G60801 NA non-coding upstream 105782 727837 ~ 736009 (+)
G60780 NA non-coding upstream 163684 673066 ~ 678107 (+)
G60693 NA non-coding upstream 244696 596824 ~ 597095 (+)
G60745 NA non-coding upstream 273859 567603 ~ 567932 (+)
G60852 NA non-coding downstream 94618 948857 ~ 959047 (+)
G60915 NA non-coding downstream 164778 1019017 ~ 1019485 (+)
G61218 NA non-coding downstream 396006 1250245 ~ 1250446 (+)
G61220 NA non-coding downstream 398097 1252336 ~ 1252899 (+)
G61219 NA non-coding downstream 398829 1253068 ~ 1253739 (+)
CI01000010_00946586_00947327 NA other downstream 90943 945182 ~ 947577 (+)
CI01000010_03197380_03199958 NA other downstream 2339916 3197380 ~ 3200044 (+)
CI01000010_03320340_03346243 NA other downstream 2459456 3313695 ~ 3347796 (+)
G62838 NA other downstream 3035856 3890095 ~ 3893793 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_035639 uckl1a coding NC_007119.7 CM002892.2 23009662 ~ 23028536 (+)