G109118


Basic Information

Item Value
gene id G109118
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 6104165 ~ 6105007 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU147380
GAGCAGTTGAGGAGCTTCTACAGGTGTTGCAGACTGGCTCTGGATGTTCTTCAAAACTCCTAGCCTGAGAAACATGTTACTTTTCTGCTTGGGTgaGGAGTTTTTGAACCAGGCTCCAACTTGGGGATGTATTGAATCTTGGGAAAATGGGTCTACCCAGGAATTGCTGCATCAGAATCATAAACACACGGATCTAAGGAACATCTTGCTTGGaccattttttcccctttttaaaAGGATTATTGGTAAGACTGATCAAATTATTTGGGATCTTTTCTGAAAActtgtttttcatatttttccttctttttcttggGTACTTTTTGGCCGGAAACTGGACAAACTTTTTCTAAGGACTGTGTAATTATGTGGAATTTGGTCTACTGTTTTATAATCTATGTCAGTGCGATCTCTGTGGCAATTCACTATAAAAGTAGTATGTGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU147380 True 445 lncRNA 0.39 2 6104165 6105007

Neighbor

gene id symbol gene type direction distance location
LOC103030993 LOC103030993,LOC108443437,LOC107566315 coding upstream 74162 6029050 ~ 6030003 (+)
LOC103033535 NA coding upstream 150128 5939684 ~ 5954037 (+)
LOC103033212 ndufs1,LOC103033212,LOC107705604,LOC107748553,LOC107566318,LOC107555450,LOC107660088 coding upstream 164494 5922340 ~ 5939671 (+)
dytn dytn coding upstream 242225 5842415 ~ 5861940 (+)
LOC103036379 NA coding upstream 277507 5813670 ~ 5826658 (+)
LOC111193656 NA coding downstream 15223 6120230 ~ 6122902 (+)
eif2s2 eif2s2,LOC107666094,LOC107729764,LOC107685810,LOC107554185,LOC107708139,LOC107596782 coding downstream 41045 6146052 ~ 6158922 (+)
ergic3 ergic3,ergi3,LOC107685813 coding downstream 76459 6181466 ~ 6194641 (+)
LOC103028186 LOC108433703 coding downstream 99157 6204164 ~ 6207611 (+)
LOC103027549 NA coding downstream 222365 6327372 ~ 6332568 (+)
G109109 NA non-coding upstream 42801 6060939 ~ 6061364 (+)
G109108 NA non-coding upstream 43594 6060315 ~ 6060571 (+)
G109072 NA non-coding upstream 268090 5827965 ~ 5836075 (+)
G109063 NA non-coding upstream 332687 5771095 ~ 5771478 (+)
G109055 NA non-coding upstream 415852 5687986 ~ 5688313 (+)
G109230 NA non-coding downstream 27792 6132799 ~ 6133752 (+)
G109239 NA non-coding downstream 58656 6163663 ~ 6163862 (+)
G109240 NA non-coding downstream 59017 6164024 ~ 6164245 (+)
G109249 NA non-coding downstream 143581 6248588 ~ 6249016 (+)
G109261 NA non-coding downstream 213700 6318707 ~ 6320098 (+)
G108999 LOC108411783,LOC107584812,LOC107555440,LOC107709735,LOC107705592 other upstream 794408 5306050 ~ 5309757 (+)
LOC103029387 LOC103029387 other upstream 1042046 5056538 ~ 5062119 (+)
wdsub1 wdsub1,LOC108411000,LOC105893302 other upstream 1276447 4805229 ~ 4827718 (+)
G108773 march7 other upstream 1512372 4586327 ~ 4591793 (+)
LOC111193715 NA other upstream 1746398 4308092 ~ 4357767 (+)
G109242 NA other downstream 59592 6164599 ~ 6166662 (+)
G109248 LOC108433704 other downstream 148203 6253210 ~ 6255057 (+)
rims4 rims4,LOC107666126,LOC107696477,LOC107708122 other downstream 626137 6731144 ~ 6866913 (+)
blcap blcap,bc10 other downstream 839758 6944765 ~ 6985492 (+)
G109527 NA other downstream 1162864 7267871 ~ 7269592 (+)

Expression


Co-expression Network