G109239


Basic Information

Item Value
gene id G109239
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 6163663 ~ 6163862 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU147538
CTAAACATAGAGAACAGgaacaggagaaaaaaacatctgaagACTTCAGAACCAAAACTGTGGACAAATATAAAATCTCCTATAACATCTCCTAAGATCTTGATGTTCCTTTGTTCCTTAGTCAAGAAGTTTACACCCCTCGGCACTGTAGCTAATCCTACTGGAACAACATCTTTTGAGAGATGAGATTAAGATGTTCA

Function

NR:

description
PREDICTED: uncharacterized protein LOC106561718

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU147538 True 200 lncRNA 0.37 1 6163663 6163862

Neighbor

gene id symbol gene type direction distance location
eif2s2 eif2s2,LOC107666094,LOC107729764,LOC107685810,LOC107554185,LOC107708139,LOC107596782 coding upstream 4741 6146052 ~ 6158922 (+)
LOC111193656 NA coding upstream 40761 6120230 ~ 6122902 (+)
LOC103030993 LOC103030993,LOC108443437,LOC107566315 coding upstream 133660 6029050 ~ 6030003 (+)
LOC103033535 NA coding upstream 209626 5939684 ~ 5954037 (+)
LOC103033212 ndufs1,LOC103033212,LOC107705604,LOC107748553,LOC107566318,LOC107555450,LOC107660088 coding upstream 223992 5922340 ~ 5939671 (+)
ergic3 ergic3,ergi3,LOC107685813 coding downstream 17604 6181466 ~ 6194641 (+)
LOC103028186 LOC108433703 coding downstream 40302 6204164 ~ 6207611 (+)
LOC103027549 NA coding downstream 163510 6327372 ~ 6332568 (+)
LOC103034740 LOC108442925 coding downstream 186539 6350401 ~ 6607304 (+)
LOC103026961 NA coding downstream 518318 6682180 ~ 6699512 (+)
G109230 NA non-coding upstream 29911 6132799 ~ 6133752 (+)
G109118 NA non-coding upstream 58656 6104165 ~ 6105007 (+)
G109109 NA non-coding upstream 102299 6060939 ~ 6061364 (+)
G109108 NA non-coding upstream 103092 6060315 ~ 6060571 (+)
G109072 NA non-coding upstream 327588 5827965 ~ 5836075 (+)
G109240 NA non-coding downstream 162 6164024 ~ 6164245 (+)
G109249 NA non-coding downstream 84726 6248588 ~ 6249016 (+)
G109261 NA non-coding downstream 154845 6318707 ~ 6320098 (+)
G109269 NA non-coding downstream 257385 6421247 ~ 6479365 (+)
G109278 NA non-coding downstream 431295 6595157 ~ 6598488 (+)
G108999 LOC108411783,LOC107584812,LOC107555440,LOC107709735,LOC107705592 other upstream 853906 5306050 ~ 5309757 (+)
LOC103029387 LOC103029387 other upstream 1101544 5056538 ~ 5062119 (+)
wdsub1 wdsub1,LOC108411000,LOC105893302 other upstream 1335945 4805229 ~ 4827718 (+)
G108773 march7 other upstream 1571870 4586327 ~ 4591793 (+)
LOC111193715 NA other upstream 1805896 4308092 ~ 4357767 (+)
G109242 NA other downstream 737 6164599 ~ 6166662 (+)
G109248 LOC108433704 other downstream 89348 6253210 ~ 6255057 (+)
rims4 rims4,LOC107666126,LOC107696477,LOC107708122 other downstream 567282 6731144 ~ 6866913 (+)
blcap blcap,bc10 other downstream 780903 6944765 ~ 6985492 (+)
G109527 NA other downstream 1104009 7267871 ~ 7269592 (+)

Expression


Co-expression Network