G109278


Basic Information

Item Value
gene id G109278
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 6595157 ~ 6598488 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU147591
ctccgccccttcgtcccaggtgtttcatgtttcctgtgtgtgtgcacctctatatAAGGTCCGTGTTCCCTTTCCctggtgtcgatccttgtacgtttttacgtctgttagtgGTCCGTGTGTTTCCCCAGTTTCTAGTTATTCCCAGTCAGTTTATTccatgtgtattttgtatttgttttgttaataaatcccatttatgtttgcatttgcgtccgcctcctcgtcctccctgcacccacCCTGACACTggttaattttaaagttattcTTTAAGACATACTTGTTTTAaagaatgcatgaaaactgtgattaaaaacagggttatttcaccaaatattgatttctgaattctgacctcttaaaactttatgaatatgaacttgttttctttgcattatttgaggtctgaaagctctgcgtctttttttttataatttcagccatttctcattttctgtaaataaatgctctaaatgagaatatatttatttgtaatttgggagaaatgttgtctgtagtttatagaataaaacaacaatgtt

Function

GO: NA

KEGG:

id description
ko04973 Carbohydrate digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU147591 True 545 lncRNA 0.36 2 6595157 6598488

Neighbor

gene id symbol gene type direction distance location
LOC103027549 NA coding upstream 262589 6327372 ~ 6332568 (+)
LOC103028186 LOC108433703 coding upstream 387546 6204164 ~ 6207611 (+)
ergic3 ergic3,ergi3,LOC107685813 coding upstream 400516 6181466 ~ 6194641 (+)
eif2s2 eif2s2,LOC107666094,LOC107729764,LOC107685810,LOC107554185,LOC107708139,LOC107596782 coding upstream 436235 6146052 ~ 6158922 (+)
LOC111193656 NA coding upstream 472255 6120230 ~ 6122902 (+)
LOC103026961 NA coding downstream 83692 6682180 ~ 6699512 (+)
LOC111193719 NA coding downstream 89652 6688140 ~ 6690475 (+)
tomm34 tomm34,LOC103026659 coding downstream 134795 6733283 ~ 6741325 (+)
psmf1 psmf1,LOC107580402 coding downstream 324062 6922550 ~ 6928741 (+)
LOC103032809 LOC108439719 coding downstream 397282 6995770 ~ 7041534 (+)
G109269 NA non-coding upstream 115792 6421247 ~ 6479365 (+)
G109261 NA non-coding upstream 275059 6318707 ~ 6320098 (+)
G109249 NA non-coding upstream 346141 6248588 ~ 6249016 (+)
G109240 NA non-coding upstream 430912 6164024 ~ 6164245 (+)
G109239 NA non-coding upstream 431295 6163663 ~ 6163862 (+)
G109318 NA non-coding downstream 16959 6615447 ~ 6616863 (+)
G109341 ywhaba,LOC107584065,LOC108412308,LOC107708121,LOC107595428 non-coding downstream 145973 6744461 ~ 6756941 (+)
G109381 NA non-coding downstream 435902 7034390 ~ 7052796 (+)
G109378 NA non-coding downstream 443942 7042430 ~ 7045381 (+)
G109379 NA non-coding downstream 447431 7045919 ~ 7049644 (+)
G109248 LOC108433704 other upstream 340100 6253210 ~ 6255057 (+)
G109242 NA other upstream 428495 6164599 ~ 6166662 (+)
G108999 LOC108411783,LOC107584812,LOC107555440,LOC107709735,LOC107705592 other upstream 1285400 5306050 ~ 5309757 (+)
LOC103029387 LOC103029387 other upstream 1533038 5056538 ~ 5062119 (+)
wdsub1 wdsub1,LOC108411000,LOC105893302 other upstream 1767439 4805229 ~ 4827718 (+)
rims4 rims4,LOC107666126,LOC107696477,LOC107708122 other downstream 132656 6731144 ~ 6866913 (+)
blcap blcap,bc10 other downstream 346277 6944765 ~ 6985492 (+)
G109527 NA other downstream 669383 7267871 ~ 7269592 (+)
gbx2 gbx2,LOC107596335,LOC103389863 other downstream 843481 7441969 ~ 7448990 (+)
LOC103043571 NA other downstream 1098622 7697110 ~ 7700306 (+)

Expression


Co-expression Network