LOC103043571


Basic Information

Item Value
gene id LOC103043571
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 7697110 ~ 7700306 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU148012
GGAACAGTAAAACAATAACAGAGGAGATGGAGAGCGAGGTGGAGGTAACGCTGGAACTCGGGCCGCTTGGAAACtttaaatGGACTGATGCCAACACAGCAGATCTTATTGTGTGGCGGGTCAGCAATAGGAACTTATTTACTGGCAAGAGGAACACGGCCCTGCGAGCTTTCGAGCAGTTTGTCAGGGAAAAGGAGCTGGAGGGTAAGGTGGCGCCGACATGGGTGAAAAAGAAATGGGAGAATCTGAGACAGAAGTATAAGGACATCAAAAGCCTCTCCTCGTTTGGGGGAGACTCATCCGCTGCTCCATGGAAATGGTTTGCAATCATGGATCAGGCTCTGAGCGAAGAGATCCCGCTCACTCCTTCCATTCTGACCAGCCCCTCCACTGCCCCCTCCACCCCCTTCACCTCGGCTGTTCTGGTGTCCTCCTCGGCTCAAGAGTCTCCGCCCgtgaagaggaggagggagcAGTACTGGCTGATGGCTCTGCAGGAGCTGGAGAGGAGGCAGGAGGAGCGAGAGCGGCGAGAGgctgagagagag
>XM_007258460.3
AaagctgtgtgtttctgtttctgtagaGAGATGGGATGAGGAACAGTAAAACAATAACAGAGGAGATGGAGAGCGAGGTGGAGGTAACGCTGGAACTCGGGCCGCTTGGAAACtttaaatGGACTGATGCCAACACAGCAGATCTTATTGTGTGGCGGGTCAGCAATAGGAACTTATTTACTGGCAAGAGGAACACGGCCCTGCGAGCTTTCGAGCAGTTTGTCAGGGAAAAGGAGCTGGAGGGTAAGGTGGCGCCGACATGGGTGAAAAAGAAATGGGAGAATCTGAGACAGAAGTATAAGGACATCAAAAGCCTCTCCTCGTTTGGGGGAGACTCATCCGCTGCTCCATGGAAATGGTTTGCAATCATGGATCAGGCTCTGAGCGAAGAGATCCCGCTCACTCCTTCCATTCTGACCAGCCCCTCCACTGCCCCCTCCACCCCCTTCACCTCGGCTGTTCTGGTGTCCTCCTCGGCTCAAGAGTCTCCGCCCgtgaagaggaggagggagcAGTACTGGCTGATGGCTCTGCAGGAGCTGGAGAGGAGGCAGGAGGAGCGAGAGCGGCGAGAGgctgagagagaggaggagagggagaggagggCGGCGGAGAGAGAGGATGAGCGCGAGAGGAGGGcggtggagagagaggaggagagggagaagCAGGCGCTGGCgagagagaggagcagagaGCAGGAGATGACAGAGAAACAGGAGCGATGGGAGAGGGAGCTGCTGgccagagaggagaggagggagaaggagtacagagaaagagaggaacgGAGGGATAAAGAAGCTGCAGCGAGGGAAGACAGGCTCTTTAAACTGCTGGAGGCCTTTGTGGCTAAAAAGTCAGATTAATAGTGTTTCATCTTCACATCCAAGAACTGTTATCTTTCTACTAATAAATGTTGCCCTGTTTTTGTA

Function

GO: NA

KEGG:

id description
ko00970 Aminoacyl-tRNA biosynthesis

RNA

RNA id representative length rna type GC content exon number start site end site
TU148012 False 548 TUCP 0.55 4 7697149 7699958
XM_007258460.3 True 935 mRNA 0.54 4 7697110 7700306

Neighbor

gene id symbol gene type direction distance location
LOC103044198 ccdc80,LOC108437683,LOC107565956 coding upstream 20023 7668378 ~ 7677087 (+)
LOC103031557 iqca1,LOC108437680,LOC107586319,LOC106590510 coding upstream 276771 7353459 ~ 7420339 (+)
LOC103022304 LOC103022304,LOC108437673,LOC107738308,LOC107559924,LOC107748531,LOC107596314,LOC107688831 coding upstream 541873 7136778 ~ 7155237 (+)
LOC111193722 LOC108273346 coding upstream 590561 7102396 ~ 7106549 (+)
LOC103032506 LOC103032506,LOC108437696 coding upstream 596635 7098514 ~ 7100475 (+)
LOC103042636 rbm46 coding downstream 78995 7779301 ~ 7785094 (+)
slc19a1 slc19a1 coding downstream 142869 7843175 ~ 7854063 (+)
obsl1 NA coding downstream 210279 7910585 ~ 7946139 (+)
inha inha,LOC107586362 coding downstream 320741 8021047 ~ 8024573 (+)
arpc2 arpc2,LOC106575630,LOC106574678 coding downstream 652870 8353176 ~ 8371385 (+)
G109561 psmb3,LOC102792592 non-coding upstream 788 7692523 ~ 7696322 (+)
G109543 NA non-coding upstream 235238 7455161 ~ 7461872 (+)
G109533 NA non-coding upstream 377171 7319636 ~ 7319939 (+)
G109532 NA non-coding upstream 386426 7310432 ~ 7310684 (+)
G109526 NA non-coding upstream 431734 7265130 ~ 7265376 (+)
G109595 nomo,LOC108438153,LOC107677623,LOC107733372,LOC107688882,LOC107562229 non-coding downstream 69072 7769378 ~ 7770359 (+)
G109627 NA non-coding downstream 247249 7947555 ~ 7948196 (+)
G109628 NA non-coding downstream 248655 7948961 ~ 7952261 (+)
G109642 NA non-coding downstream 308281 8008587 ~ 8095818 (+)
G109645 NA non-coding downstream 321526 8021832 ~ 8027794 (+)
gbx2 gbx2,LOC107596335,LOC103389863 other upstream 248120 7441969 ~ 7448990 (+)
G109527 NA other upstream 427518 7267871 ~ 7269592 (+)
blcap blcap,bc10 other upstream 711618 6944765 ~ 6985492 (+)
rims4 rims4,LOC107666126,LOC107696477,LOC107708122 other upstream 830197 6731144 ~ 6866913 (+)
G109248 LOC108433704 other upstream 1442053 6253210 ~ 6255057 (+)
G109613 NA other downstream 160514 7860820 ~ 7861432 (+)
igfbp2 LOC108438161 other downstream 391973 8092279 ~ 8124872 (+)
G109669 LOC108438163 other downstream 496664 8196970 ~ 8199977 (+)
G109707 NA other downstream 849808 8550114 ~ 8561274 (+)
LOC103038228 pbx1,pbx1b,LOC108272157,LOC108443834,LOC104918287,LOC107677498 other downstream 1816169 9516475 ~ 9630237 (+)

Expression


Co-expression Network