LOC103042636 (rbm46)


Basic Information

Item Value
gene id LOC103042636
gene name rbm46
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 7779301 ~ 7785094 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007258457.2
CTACACGGATACCTACTGAGCACGGGGGGCGTGTTTATGTAGAGTCTATCCTACACACACCTGTGATTAATATTGatataacactgttataattgataatgatataatttatactgtaattaattaatattcataTAACACCCGTTATACCAGAAAActaccgctagagggagcccgcaaGGCTGCTGCCAGTTTCGCGTCTAATATACAGAGGAGGAAAACTAAGGATCCCAAGGAAAGAAAGCAGTGTCTGTCTTCTTTACCAAGATGGAAAGCTCCAAAGAAGCTGCTCTCTTGGCCCTGATGGAGAAAACAGGTTACAGTATGGTTCAAGAAAACGGCCAACGAAAATTTGGTGGTCCACCACCAGGCTGGGAAGGCCTCCCTCCTCCCAGAGGCTGTGAGGTTTTTGTGGGGAAAATTCCCCGGGACATTTATGAAGACGAGCTGGTGCCTGTGTTTGAGCGTGCAGGCCGTATGTATGAATTTCGTTTGATGATGGAGTTTAGCGGGGAGAATCGTGGCTATGCCTTTGTCAGGTACACAACCCAAGAAGCTGCACAGCGAGCCATAAATCTTCTCGACAACTATGAGATCCATCCTGGCAAGTTTatcggagtgtgtgtgagtctggACAACTGTCGACTCTTTATTGGATCCCTCCCAAAAGACAAGACGAAGGAGGAGATACAGGAAGAAATGATGAAGGTGACAGATGGAGTAGTGGACGTTATAGTGTatcccagcaccacagacaagAGTAAGAACCGTGGTTTTGCCTTTGTGGAGTATGAATCGCACAAAGCTGCTGCCATGGCCCGCAGGAAACTCATACCAGAAACGTTCCAGCTGTGGGGCCACACTCTTCAGGTTCACTGGGCAGAACCGGAGAAGGATGTAGACGAGGAGACAATGCAGCGAGTGCGGGTTCTGTATGTTCGCAATCTTATGTTGCACACGACGGAGGAAACTCTTCGCCTCGAGTTCTCTCGGCAGAAGCCTGGCTCTGTGGAGCGTGTTAAGAAGCTGACGGATTACGCCTTCATCCACTTCCACAGTCGGGAGGATGCACTTGCTGCACAGGAGTCGATGAATGGCAAACTTATTGATGGCTCGCCCATCGAAGTCAGTCTCGCTAAGCCAGTCGGCAAAGACAAAGACGGCAATCGACGGTTTGGAACGCGGGCCGGCCATAACGGAACTACTGTGGGAGTTTACCGTAACTCCAGCTTCGTTTTACGGAGCGGTGAGGATTCTGGGATTGGTTTGGCCACAGGGGCAGCGGTTATAAGAGATGGGTTATGTCCTCGTCCTCTGAGCCTGCCTCCTCATATGGGCAATCCATACGCTGTGGACATAGAGCGATGCGTGTACCCGTTACTGCCAGGCTCCAGTCTGATACCAGGCAACCTGCAGAGTCTCAAACCCAACCAGCTGAGCTCTGCTGTATCACTGCTGGAATATATCTGCCACAAGAATGGCTGGTCCCTGCCGGAGTATTACCTTTACTCCACAATGGGGCATGATGGGAAAACACTGCTCGTCTATGAAGTAGTCATTAACAGCACCAGAAGCAGCTACATGCCTGATAAAGTTTGTGCCGTTCTGGAGGATGCCAAAGAGCTTGCTGCTCAGAATGTACTTCAGAACCTGCGTTAGTGTGTTTGTTTTCGTGCTTTCAGAGTTTTAATTTCCGTTGTgttccatttttatttgttcaaaACGTtgttaaaaagcagtttttgagTCGTGTTcgatgaaaaacaagtatctctaaaacacttaaactttagaggagagagaaaaaagttcTAAACTTCTTAAATGTCAAtggaattcaatgtaaaaagagtattTCTATAGGTCCATTCATCAacaaattttggcacagtgtaagggacagatTAGCCGTTCAAATTATGATAAAAAATCGACATAAAtgcagatacttgtttttcattggacaacaatgatatgaaaaaaatagtTGATGTTGTGCTCCATTGGCTGTGTTCTTTTGTGTGGGTAAATGAAGCTTTGAATTTGTTTTACTAGCACAAGTTTTATTTCATCACACTAATTTTTTATAGTgttatttaaaggagaactccagtgtaaaatgggcttggcgtgtagtgaaacataataatGGGTATGAACTTTTAGCTCTCGTCTGTTCACCCGCTTTCAGCTGATGCTTCATGcaaataaatggctttttaaaatgtgtttatttccaaattttatcctattttctcagtttctttattttctcaatttacacagccaattactcaacccactcacaaccgggctctctcagggctccggcagctgatgccGATCATATTGGCAGCACTTTAGTCTGCCGGACCACTCAGAGCTACAGaaatgtctatttttacaccatttacaaacttaaagtagctctacacttcattggtagaatgaCGTTTAAAATAAGGCactgaaatgtattttagtttattaaaaacacagttataCACATTGCACCTTCAGCTAATTCTCCAGGTGCTGCCTTCTTGAAATTACGATAATTCGACTGACAAGCACAAGGCATAGGCTATTTGTTGTATGGTGCTATTCATTCTCATGTACACAAtcaacagatttattttagcAACATATTACCAGAAATTAATGCATTttcacagaattaattttgcaatctgcaaATCCCCTATACCAGCTTTTCGTTCATGGTACTGtgtgtaaaaacactgtttttattaaactatctgtaaacttttaaagctctcagtgcATCATTTTAAACATCAGGGCCCTCacaattctaccaatgaagttgGAGCTATTTTAAGCTTgttattggtgtaaaaatagccatttctttgcatgggtaactcTATGCCCGTATCTCGAGCACTGTCTATTTTCTAAACTAAGGTTTGCActagttatcatgtttcactacaacccaagagccaaagtccatttcacaccacaTTTCACCTTTAACAACTGTTCTCTATTGTCTTTTTGCTTGGTTGGTCAATgacactgttttgttttgttttgttttatcacCATGGCCAGCTTTCTTTAAATAACAAGCTGTGGTTTTGTTacttttcattcattctttctttacTTCCAATATATTAGTGCAAAGTAATTCCTCTGATTGTTTGAAGCTTATGAATTAAAGCGCTCTTTGATCTTATTCATAGCAAATAAAGCAATATAAATGCATTTCTATTATACTCCACTAGATGGAAGTATTCTCTCATTAAGAACACTGTAGGATTCTGATGCAGGATTTGTCCACTCAGTAC

Function

symbol description
rbm46 Predicted to enable mRNA binding activity. Predicted to be active in nucleus. Orthologous to human RBM46 (RNA binding motif protein 46).

NR:

description
PREDICTED: probable RNA-binding protein 46

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K25082 RBM46; RNA-binding protein 46

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007258457.2 True 3317 mRNA 0.42 5 7779301 7785094

Neighbor

gene id symbol gene type direction distance location
LOC103044198 ccdc80,LOC108437683,LOC107565956 coding upstream 102214 7668378 ~ 7677087 (+)
LOC103031557 iqca1,LOC108437680,LOC107586319,LOC106590510 coding upstream 358962 7353459 ~ 7420339 (+)
LOC103022304 LOC103022304,LOC108437673,LOC107738308,LOC107559924,LOC107748531,LOC107596314,LOC107688831 coding upstream 624064 7136778 ~ 7155237 (+)
LOC111193722 LOC108273346 coding upstream 672752 7102396 ~ 7106549 (+)
LOC103032506 LOC103032506,LOC108437696 coding upstream 678826 7098514 ~ 7100475 (+)
slc19a1 slc19a1 coding downstream 58081 7843175 ~ 7854063 (+)
obsl1 NA coding downstream 125491 7910585 ~ 7946139 (+)
inha inha,LOC107586362 coding downstream 235953 8021047 ~ 8024573 (+)
arpc2 arpc2,LOC106575630,LOC106574678 coding downstream 568082 8353176 ~ 8371385 (+)
LOC103042259 NA coding downstream 596026 8381120 ~ 8389184 (+)
G109595 nomo,LOC108438153,LOC107677623,LOC107733372,LOC107688882,LOC107562229 non-coding upstream 8942 7769378 ~ 7770359 (+)
G109564 NA non-coding upstream 15541 7679881 ~ 7763760 (+)
G109561 psmb3,LOC102792592 non-coding upstream 82979 7692523 ~ 7696322 (+)
G109543 NA non-coding upstream 317429 7455161 ~ 7461872 (+)
G109533 NA non-coding upstream 459362 7319636 ~ 7319939 (+)
G109627 NA non-coding downstream 162461 7947555 ~ 7948196 (+)
G109628 NA non-coding downstream 163867 7948961 ~ 7952261 (+)
G109642 NA non-coding downstream 223493 8008587 ~ 8095818 (+)
G109645 NA non-coding downstream 236738 8021832 ~ 8027794 (+)
G109650 NA non-coding downstream 261848 8046942 ~ 8048041 (+)
LOC103043571 NA other upstream 78995 7697110 ~ 7700306 (+)
gbx2 gbx2,LOC107596335,LOC103389863 other upstream 330311 7441969 ~ 7448990 (+)
G109527 NA other upstream 509709 7267871 ~ 7269592 (+)
blcap blcap,bc10 other upstream 793809 6944765 ~ 6985492 (+)
rims4 rims4,LOC107666126,LOC107696477,LOC107708122 other upstream 912388 6731144 ~ 6866913 (+)
G109613 NA other downstream 75726 7860820 ~ 7861432 (+)
igfbp2 LOC108438161 other downstream 307185 8092279 ~ 8124872 (+)
G109669 LOC108438163 other downstream 411876 8196970 ~ 8199977 (+)
G109707 NA other downstream 765020 8550114 ~ 8561274 (+)
LOC103038228 pbx1,pbx1b,LOC108272157,LOC108443834,LOC104918287,LOC107677498 other downstream 1731381 9516475 ~ 9630237 (+)

Expression


Co-expression Network