gbx2 (gbx2,LOC107596335,LOC103389863)


Basic Information

Item Value
gene id gbx2
gene name gbx2,LOC107596335,LOC103389863
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 7441969 ~ 7448990 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU147984
CGGGACAGACGAGCAAGTGCTGCACGGCGAAAGGAGGGAGGTCGTGAGATCGCGCGTGCACGTACGCACGCTCGCTAGAGTATAGAAGCGAGGAAGAGATAgtgatagagaaaaagagaaagagtgatagaaagaaagagagagggaaaaaaaaacgaacttAAAAAGTAAAGTGACTCCCGGGTTCGCAGCGGACGGCGCGCGCGCACACTGACTGGCTCAGGGCATGCCAGCTCGCGCGCATTCACCTGCCTGTTTAAAGCGAGGACACGCTCTCTTGGACACGGAAACGCGCAGGTGGACGCGAGGAtggtgtgactgggtgtgaaCGAGACGGTTCTGTTGTCTCCTCGTGTCCGGCAGGATTACGAGGACTCCGAGGTCTTTTGGCACCAGCACCGGACAGAACAGCCAAGGAGTGCACCGCATCGGGAACGCGCGCGCACCAAGGCCGCGGTCACTCCGCACTCACTGACACTAAAAGAAGCCATACCCACGCACGCGGGCGCGCACGAGCTCATGAGCGCGGCCTTCGGCCCGTCGTCCTTCGTCATGATGCAGCGTCCCGCCGCCTTCAGCATAGACTCTCTGATCGGCGCACCGCCGGCCCCGAGCCCCGGTCCGCTGCTGTACGCCGGCTACCCCATGTTCGTGCCCTACCGCTCGGTGGTGCTTCCGCCACCGCCGCCACGACGCTGCTGCCGCTCGCCTTTCACGACGAGGCCGGACACTGCGCTACAGAGGTCACACCAAGGACGACTCCAAAGACGACGATTGTCACCGAAAGGACGACGGTTTCTCCATGGACAGTGACCTAGACTACAGCTCGGACGAGGCCGGCGGCGGAGGCTGCGGACTGGGCCACAAGGACGACGGGGATGCGGGCGGGCCGCTCGAGGACGGCGGGCGGGGAGGCGTGGGGGGCGGCGGCGGCTCGGCGGGAGCGGGAAAGAACCGGCGGCGGCGGACGGCATTCACGAGCGAGCAGCTGCTCGAGCTGGAAAAGGAGTTCCACTGCAAGAAGTACCTGTCGCTGACGGAGCGCTCTCAGATTGCGCACGCGCTCAAGCTTAGCGAGGTGCAGGTGAAGATCTGGTTCCAGAACCGGCGCGCCAAGTGGAAGCGCGTGAAGGCGGGCAACGTGAACACGAAGGCGGGCGAGCCCTCGCGCAACCCTAAGATAGTCGTGCCGATTCCCGTGCATGTGAGCCGATTTGCCATCCGCAgtcagcatcagcagctggagcaggCCAGGCCGTGACCACGCCCACTCATCTATCCATCCGCCTATTCATCCATTCAGAGCtgagactgtacttttatatttatgtgtaaAATAGGAGGGTTTTGGTTTAGGAGATACGAGGACGTGGAAGAGGAGGATAATCTGCGTTTGAGGAACTTTGTGAAAAACACACCTGAGCGAAAAACACACCTGAGCAAAAGACACACCGGAGCCAACCAGGTGtacaggtgttctgtcgagttttgctacccatcgatatgtgctgtGCATGCGCCcaccaacattttaaaatattttttcatgcttttcatgataattccttatgtttttatTGGGAGTATTAAACAACATGCTTGCATGGTAACATATACTGTAATTATCAGtaataattgttaaaaaataataataaactaataaactataaaactattatCACATATATGaacttaactttttaaactttaccTGATACCCTGCCACACATCCTACCTAGGCTTTTGGTTTCTAATATGGTGCtgcttttttgtattatttaactattttttaaaatgaaatactaCTAGGTTAGCACGGTtcgacaaggtagcacaactcgacagaacaccggcaaCAAAGGAGAACTCGCAGAACCAAAAACGCAGAACTGGGACCAAATTATGAACAGAAACTCCAAAAACAAAACTGAGACTTTAAAAGTGTAGAAATGTTGCTGGAGTTCTGTTGCAGGAGCACTTGGgaagttgaagaagaaaaaaagctgAAGTTCACTGTAAGGACTAAGTAGCTTCGCCCTCGACCTGTTTAAAAACTCTGGACTTTATTTgttactatatttttttttatttacagagctCCTGCGATGACATACATGGTTGTTGTTTTAATAACGCGTGGTCACAAAATGGCATATTAAGGCCACAAGTTAACCCATAAGATCCCGGACCCATTTCTGAATGTTGAAAccaatttaaaaactgaattagaTAAATTCAATGAGCAACTCAATGTTTCTTATTGTGGGAACATGATTGTAAAAAATTTAACGTTAAAATCAagataaaacataaatgaaacaacaacaatttcatgactgttattaatattttggaatgtaaaacattaatatatggaacgtaaaacatttaattaaagtttttgaATGGTTATATGGttggaaaaaaacatacagaactgTAGAAGCAAatcatacacttttaaaatttaATAGTTAATTTTATCTCCAGCTCTAACCCTAAAACTCTCCTATATTCTCTAGGTAAATATGGTCAGATGAAGGAAGACAGATTTTCACACTGTCCTCCTGTGACTGTTAtactctcaggatgttcagtagaTGTCACGTCAGGTGTAGATGTTCTTCATgagttaaaatcaaagaacagAGAGCTggaaaatacatttacacagcttttaaagctttaccatgggctcttttgggttaTTATAATAGTGGACTATTGTCAGGaggtacatacacacacatatataaattgTCGTTGTCTCACACATTAATTTGTGGAGTCGATATATTTATTTGTGGCATTACACAATTATTTCTTGGCCTTAATGTGACCACGCATTTTAAAAAGAACCAGCATGTCAGCAAGGCGCTccacccagctggcatttcaacgttaAATCAACGTTTGTCAacgttaatgttatggttgactaaacgttggatttggtgttgattttaagaaagtaaataaacgTTGATATGGCAGCGTTGTTTCAACGTCATActttcaacctttaataaaccttAACTCACTAAAATGAGAAatacatcactgcagtaaatctgattataaataaagtttatgcCCACCACTACACATCTGATAAACTAAAAGagtaaaacaaatagaacatgaacatggtgttaaattaaaaagcagttactgcaaacacCTTTTCATTCCATcatccaaccgtttttagaaattatttggtgatgaaatgtaaaacgctgattcaaaaggcagaaggttgaggacgttatgttgattcaacgttgttgttgaaacaacaacatacattactttagtcatgaaggtcggttgtgtgccagctaaCTCGTTTCCCCTCTCTGAGTTTGTTTTGGGGGCGCGCTGCTAATTTATTTGATATTGTGAGAAAAGTTGCTAACACTCGATGGTTTTATTGGTTTGAGATTATTGTGTGGATTAAAGTTGGATTATAAGAAGTTGTGAAA
>XM_007258473.3
GCTGCACGGCGAAAGGAGGGAGGTCGTGAGATCGCGCGTGCACGTACGCACGCTCGCTAGAGTATAGAAGCGAGGAAGAGATAgtgatagagaaaaagagaaagagtgatagaaagaaagagagagggaaaaaaaaacgaacttAAAAAGTAAAGTGACTCCCGGGTTCGCAGCGGACGGCGCGCGCGCACACTGACTGGCTCAGGGCATGCCAGCTCGCGCGCATTCACCTGCCTGTTTAAAGCGAGGACACGCTCTCTTGGACACGGAAACGCGCAGGTGGACGCGAGGAtggtgtgactgggtgtgaaCGAGACGGTTCTGTTGTCTCCTCGTGTCCGGCAGGATTACGAGGACTCCGAGGTCTTTTGGCACCAGCACCGGACAGAACAGCCAAGGAGTGCACCGCATCGGGAACGCGCGCGCACCAAGGCCGCGGTCACTCCGCACTCACTGACACTAAAAGAAGCCATACCCACGCACGCGGGCGCGCACGAGCTCATGAGCGCGGCCTTCGGCCCGTCGTCCTTCGTCATGATGCAGCGTCCCGCCGCCTTCAGCATAGACTCTCTGATCGGCGCACCGCCGGCCCCGAGCCCCGGTCCGCTGCTGTACGCCGGCTACCCCATGTTCGTGCCCTACCGCTCGGTGGTGCTTCCGCCACCGCCGCCACCCCCGCCTCCTCCACCCGTAGCCCCTCCGCCACCCATGCCCTCCACCGCGCATCCACCGCACCAGCTGCCCGGGCTCCCCGGCTCCTTCTGCTCAGGCCTCGCGCTCATGGCCACCCTACCGGGAGGCTTCCCCGCCGCCCCTCAGCACCACGACGCCGCCAGGAAGTTCGGGGGAGGTCAGCAGGCGCTGCACGCGGTCTTCGACAAGGCGCAGGAGGCGCGCGCCGACGGGGACGATCCATCCGGGAAGGGGTTCTTGGGGAAGGAGGCCACGACGCTGCTGCCGCTCGCCTTTCACGACGAGGCCGGACACTGCGCTACAGTACGAGGTCACACCAAGGACGACTCCAAAGACGACGATTGTCACCGAAAGGACGACGGTTTCTCCATGGACAGTGACCTAGACTACAGCTCGGACGAGGCCGGCGGCGGAGGCTGCGGACTGGGCCACAAGGACGACGGGGATGCGGGCGGGCCGCTCGAGGACGGCGGGCGGGGAGGCGTGGGGGGCGGCGGCGGCTCGGCGGGAGCGGGAAAGAACCGGCGGCGGCGGACGGCATTCACGAGCGAGCAGCTGCTCGAGCTGGAAAAGGAGTTCCACTGCAAGAAGTACCTGTCGCTGACGGAGCGCTCTCAGATTGCGCACGCGCTCAAGCTTAGCGAGGTGCAGGTGAAGATCTGGTTCCAGAACCGGCGCGCCAAGTGGAAGCGCGTGAAGGCGGGCAACGTGAACACGAAGGCGGGCGAGCCCTCGCGCAACCCTAAGATAGTCGTGCCGATTCCCGTGCATGTGAGCCGATTTGCCATCCGCAgtcagcatcagcagctggagcaggCCAGGCCGTGACCACGCCCACTCATCTATCCATCCGCCTATTCATCCATTCAGAGCtgagactgtacttttatatttatgtgtaaAATAGGAGGGTTTTGGTTTAGGAGATACGAGGACGTGGAAGAGGAGGATAATCTGCGTTTGAGGAACTTTGTGAAAAACACACCTGAGCGAAAAACACACCTGAGCAAAAGACACACCGGAGCCAACCAGGTGtacaggtgttctgtcgagttttgctacccatcgatatgtgctgtGCATGCGCCcaccaacattttaaaatattttttcatgcttttcatgataattccttatgtttttatTGGGAGTATTAAACAACATGCTTGCATGGTAACATATACTGTAATTATCAGtaataattgttaaaaaataataataaactaataaactataaaactattatCACATATATGaacttaactttttaaactttaccTGATACCCTGCCACACATCCTACCTAGGCTTTTGGTTTCTAATATGGTGCtgcttttttgtattatttaactattttttaaaatgaaatactaCTAGGTTAGCACGGTtcgacaaggtagcacaactcgacagaacaccggcaaCAAAGGAGAACTCGCAGAACCAAAAACGCAGAACTGGGACCAAATTATGAACAGAAACTCCAAAAACAAAACTGAGACTTTAAAAGTGTAGAAATGTTGCTGGAGTTCTGTTGCAGGAGCACTTGGgaagttgaagaagaaaaaaagctgAAGTTCACTGTAAGGACTAAGTAGCTTCGCCCTCGACCTGTTTAAAAACTCTGGACTTTATTTgttactatatttttttttatttacagagctCCTGCGATGACATACATGGTTGTTGTTTTAATAACGCGTGGTCACAAAATGGCATATTAAGGCCACAAGTTAACCCATAAGATCCCGGACCCATTTCTGAATGTTGAAAccaatttaaaaactgaattagaTAAATTCAATGAGCAACTCAATGTTTCTTATTGTGGGAACATGATTGTAAAAAATTTAACGTTAAAATCAagataaaacataaatgaaacaacaacaatttcatgactgttattaatattttggaatgtaaaacattaatatatggaacgtaaaacatttaattaaagtttttgaATGGTTATATGGttggaaaaaaacatacagaactgTAGAAGCAAatcatacacttttaaaatttaATAGTTAATTTTATCTCCAGCTCTAACCCTAAAACTCTCCTATATTCTCTAGGTAAATATGGTCAGATGAAGGAAGACAGATTTTCACACTGTCCTCCTGTGACTGTTAtactctcaggatgttcagtagaTGTCACGTCAGGTGTAGATGTTCTTCATgagttaaaatcaaagaacagAGAGCTggaaaatacatttacacagcttttaaagctttaccatgggctcttttgggttaTTATAATAGTGGACTATTGTCAGGaggtacatacacacacatatataaattgTCGTTGTCTCACACATTAATTTGTGGAGTCGATATATTTATTTGTGGCATTACACAATTATTTCTTGGCCTTAATGTGACCACGCATTTTAAAAAGAACCAGCATGTCAGCAAGGCGCTccacccagctggcatttcaacgttaAATCAACGTTTGTCAacgttaatgttatggttgactaaacgttggatttggtgttgattttaagaaagtaaataaacgTTGATATGGCAGCGTTGTTTCAACGTCATActttcaacctttaataaaccttAACTCACTAAAATGAGAAatacatcactgcagtaaatctgattataaataaagtttatgcCCACCACTACACATCTGATAAACTAAAAGagtaaaacaaatagaacatgaacatggtgttaaattaaaaagcagttactgcaaacacCTTTTCATTCCATcatccaaccgtttttagaaattatttggtgatgaaatgtaaaacgctgattcaaaaggcagaaggttgaggacgttatgttgattcaacgttgttgttgaaacaacaacatacattactttagtcatgaaggtcggttgtgtgccagctaaCTCGTTTCCCCTCTCTGAGTTTGTTTTGGGGGCGCGCTGCTAATTTATTTGATATTGTGAGAAAAGTTGCTAACACTCGATGGTTTTATTGGTTTGAGATTATTGTGTGGATTAAAGTTGGATTATAAGAAGTTGTGAAA

Function

symbol description
gbx2 Enables DNA-binding transcription factor activity, RNA polymerase II-specific. Acts upstream of or within cerebellum development; iridophore differentiation; and telencephalon regionalization. Predicted to be active in nucleus. Is expressed in several structures, including midbrain hindbrain boundary neural keel; midbrain hindbrain boundary neural rod; midbrain neural rod; nervous system; and presumptive rhombomere 1. Orthologous to human GBX2 (gastrulation brain homeobox 2).

NR:

description
PREDICTED: homeobox protein GBX-2-like

GO:

id name namespace
GO:0030902 hindbrain development biological_process
GO:0003677 DNA binding molecular_function

KEGG:

id description
K09321 GBX; homeobox protein GBX

RNA

RNA id representative length rna type GC content exon number start site end site
TU147984 False 3485 TUCP 0.45 3 7441969 7448990
XM_007258473.3 True 3745 mRNA 0.47 2 7441987 7448990

Neighbor

gene id symbol gene type direction distance location
LOC103031557 iqca1,LOC108437680,LOC107586319,LOC106590510 coding upstream 21630 7353459 ~ 7420339 (+)
LOC103022304 LOC103022304,LOC108437673,LOC107738308,LOC107559924,LOC107748531,LOC107596314,LOC107688831 coding upstream 286732 7136778 ~ 7155237 (+)
LOC111193722 LOC108273346 coding upstream 335420 7102396 ~ 7106549 (+)
LOC103032506 LOC103032506,LOC108437696 coding upstream 341494 7098514 ~ 7100475 (+)
LOC103023115 NA coding upstream 369878 7070695 ~ 7072091 (+)
LOC103044198 ccdc80,LOC108437683,LOC107565956 coding downstream 219388 7668378 ~ 7677087 (+)
LOC103042636 rbm46 coding downstream 330311 7779301 ~ 7785094 (+)
slc19a1 slc19a1 coding downstream 394185 7843175 ~ 7854063 (+)
obsl1 NA coding downstream 461595 7910585 ~ 7946139 (+)
inha inha,LOC107586362 coding downstream 572057 8021047 ~ 8024573 (+)
G109533 NA non-coding upstream 122030 7319636 ~ 7319939 (+)
G109532 NA non-coding upstream 131285 7310432 ~ 7310684 (+)
G109526 NA non-coding upstream 176593 7265130 ~ 7265376 (+)
G109501 NA non-coding upstream 257265 7184136 ~ 7184704 (+)
G109500 NA non-coding upstream 257915 7183687 ~ 7184054 (+)
G109543 NA non-coding downstream 6171 7455161 ~ 7461872 (+)
G109564 NA non-coding downstream 230891 7679881 ~ 7763760 (+)
G109561 psmb3,LOC102792592 non-coding downstream 243533 7692523 ~ 7696322 (+)
G109595 nomo,LOC108438153,LOC107677623,LOC107733372,LOC107688882,LOC107562229 non-coding downstream 320388 7769378 ~ 7770359 (+)
G109627 NA non-coding downstream 498565 7947555 ~ 7948196 (+)
G109527 NA other upstream 172377 7267871 ~ 7269592 (+)
blcap blcap,bc10 other upstream 456477 6944765 ~ 6985492 (+)
rims4 rims4,LOC107666126,LOC107696477,LOC107708122 other upstream 575056 6731144 ~ 6866913 (+)
G109248 LOC108433704 other upstream 1186912 6253210 ~ 6255057 (+)
G109242 NA other upstream 1275307 6164599 ~ 6166662 (+)
LOC103043571 NA other downstream 248120 7697110 ~ 7700306 (+)
G109613 NA other downstream 411830 7860820 ~ 7861432 (+)
igfbp2 LOC108438161 other downstream 643289 8092279 ~ 8124872 (+)
G109669 LOC108438163 other downstream 747980 8196970 ~ 8199977 (+)
G109707 NA other downstream 1101124 8550114 ~ 8561274 (+)

Expression


Co-expression Network