G109533


Basic Information

Item Value
gene id G109533
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 7319636 ~ 7319939 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU147973
taagtttctttgattttaccaaattaaaaacctctggaatataatcaagaggaagatggatgatcacaaaccatcaaaccaccaaactgaactgcttgaatttttgcaccaggagtaaagcagcataaagttatccaaaagcagtgtgtaagactggtggaggagaacatgatgccaagatgcatgaaaaaaaaaactgtgattaaaaaacaaccaggattattccaccaaatattgattatttctgaactcttaaaactttatgaatatgaacttgttttctttgcattatttgaggtctgaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU147973 True 304 lncRNA 0.33 1 7319636 7319939

Neighbor

gene id symbol gene type direction distance location
LOC103022304 LOC103022304,LOC108437673,LOC107738308,LOC107559924,LOC107748531,LOC107596314,LOC107688831 coding upstream 164399 7136778 ~ 7155237 (+)
LOC111193722 LOC108273346 coding upstream 213087 7102396 ~ 7106549 (+)
LOC103032506 LOC103032506,LOC108437696 coding upstream 219161 7098514 ~ 7100475 (+)
LOC103023115 NA coding upstream 247545 7070695 ~ 7072091 (+)
LOC103032809 LOC108439719 coding upstream 278102 6995770 ~ 7041534 (+)
LOC103031557 iqca1,LOC108437680,LOC107586319,LOC106590510 coding downstream 33520 7353459 ~ 7420339 (+)
LOC103044198 ccdc80,LOC108437683,LOC107565956 coding downstream 348439 7668378 ~ 7677087 (+)
LOC103042636 rbm46 coding downstream 459362 7779301 ~ 7785094 (+)
slc19a1 slc19a1 coding downstream 523236 7843175 ~ 7854063 (+)
obsl1 NA coding downstream 590646 7910585 ~ 7946139 (+)
G109532 NA non-coding upstream 8952 7310432 ~ 7310684 (+)
G109526 NA non-coding upstream 54260 7265130 ~ 7265376 (+)
G109501 NA non-coding upstream 134932 7184136 ~ 7184704 (+)
G109500 NA non-coding upstream 135582 7183687 ~ 7184054 (+)
G109399 NA non-coding upstream 228401 7089743 ~ 7091235 (+)
G109543 NA non-coding downstream 135222 7455161 ~ 7461872 (+)
G109564 NA non-coding downstream 359942 7679881 ~ 7763760 (+)
G109561 psmb3,LOC102792592 non-coding downstream 372584 7692523 ~ 7696322 (+)
G109595 nomo,LOC108438153,LOC107677623,LOC107733372,LOC107688882,LOC107562229 non-coding downstream 449439 7769378 ~ 7770359 (+)
G109627 NA non-coding downstream 627616 7947555 ~ 7948196 (+)
G109527 NA other upstream 50044 7267871 ~ 7269592 (+)
blcap blcap,bc10 other upstream 334144 6944765 ~ 6985492 (+)
rims4 rims4,LOC107666126,LOC107696477,LOC107708122 other upstream 452723 6731144 ~ 6866913 (+)
G109248 LOC108433704 other upstream 1064579 6253210 ~ 6255057 (+)
G109242 NA other upstream 1152974 6164599 ~ 6166662 (+)
gbx2 gbx2,LOC107596335,LOC103389863 other downstream 122030 7441969 ~ 7448990 (+)
LOC103043571 NA other downstream 377171 7697110 ~ 7700306 (+)
G109613 NA other downstream 540881 7860820 ~ 7861432 (+)
igfbp2 LOC108438161 other downstream 772340 8092279 ~ 8124872 (+)
G109669 LOC108438163 other downstream 877031 8196970 ~ 8199977 (+)

Expression


Co-expression Network