arpc2 (arpc2,LOC106575630,LOC106574678)


Basic Information

Item Value
gene id arpc2
gene name arpc2,LOC106575630,LOC106574678
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 8353176 ~ 8371385 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007244237.3
CGGAAAAGGGGAGCGGAAGTGTTTAGAGGAGGAAGCGGCCTGTAGTAAATATTCCAGAGCAGAAATCAGAGGGATTTTAACTGAAAAcagattaaatattaatttattgagTAAATCTCAGAGTTTTAGAGCGGAGAGATGATTCTACTGGAGATCAACAACCGCATCATAGAGGAGACGCTCAGCCTGAAGTTCGAGAGCGCGAGTAACGGGAATAAACCTGAGGCAGTTGAAGTCACTTTTGCAGACTTTGATGGCGTCCTTTACCACATCTCAAACCCTGATGGAGACAAGACAAAAATCATGGTCAGCATCTCCCTCAAATTCTACAAGGAGCTGCAGGAACACGGAGCCGATGAGCTTTTAAAGAGAGTCTATGGAAATTTCCTGGTGGCGCCTGAGGCAGGTTACAATGTGTCCTTGCTGTTTGACCTGGATACACTTCCTGCGAATAAGGAAGAGCTGGTTCACCAGGCGGGCATGCTGAAGAGGAACTGCTTCGCTTCTGTGTTTGAGAAGTACTTCAAGTTCCAGGAGGAGGGTAAAGAGGGGGAGCAGAGGGCTGTGGTCCATTACCGTGATGATGAGTCCATGTATCTGGAGGcaaagaaagacagagtgacGGTGGTTTTCAGCACCGTCTTTAAAGACGACGATGATGTCATAATCGGGAAAGTGTTTATGCAGGAGTTTAAGGAGGGTCGGAGGGCGAGTCACACGGCCCCACAGGTGCTGTTCAGTCACAGGGAACCCCCCCTGGAGCTGAAGGACACGGACGCTGCTGTGGGAGACAACATCGGTTACATTACGTTCGTCCTGTTTCCCCGACACACCAACGCAAATACCAGAGACAACACCATCAATCTTATTCACACCTTCCGGGACTACCTGCACTACCACATCAAGTGCTCCAAGGCCTACATTCACACACGCATGAGGGCCAAGACCTCAGACTTCCTGAAGGTGCTGAACAGAGCCAGACCTGACGCTGAGAAAAAGGAGATGAAGACCATGTCGGGAAAGACCTTCTCTCGCTAAAGGACACTTACTCCAGTCCCAGGCTCCTCAGAAAAGGCCTTTCAGCTCCATCAGCTTCTCAAACGGGAGGAGAGGACTCCTCCATCATCgtcttctccttcttttttgTTGCTTTGCTTTTATaagaatacagctctggaaaaaaaaactaagagagcacttcagtttctgaatcagtttctctgattttgctatttataggtttatgtttgagtaaaatgaagattgttgttttattctataaactacagacatttcttctaaatttccccaaaattctaaataaaaatattctcatttagagcatttatttgcagaaaatgagaaatggctgaaataacaaaaaatgcagacctcaaataatgcaaagaaaacaaagttcatattcataaaggtttaagagttcagcttcaatatttggtgaaataaccctgttttttaattttgcagttttcatgcatcgtgttctcctccaccagtcttacacactgcttttggataactttatgtctttacttctggtgcaaaaaaaaataaataaatcagttcagcttggtttgatagctaagtggtctcttatcttttttccagagctgtatatgcttcgtaaataaaatttcagacaattttttttttaaagggcatTCCTTCTTTGAAGCACAtcaaagtatatatttaaatcagaaatatataaatatatctgtattaaattgaaaaaaaaaacatttttatacgaAATCTTTTACTTGTTACTGTGTTACTGTTTGTTATCTTGTCACTGACTTACCTTTTGATCAGTGTAGCTGATCTTGCCTCAGGCTCCTCCCCCCCCCCGTTCCTCTCTTTCATGTCTGTCACAACTTACCACTGTAAACGGATGGTTACAACATGACAAATAAAAACGCCTTCTTTcgga

Function

symbol description
arpc2 Predicted to enable actin filament binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in Arp2/3 complex-mediated actin nucleation. Predicted to act upstream of or within actin filament polymerization and regulation of actin filament polymerization. Predicted to be located in actin cytoskeleton; cell projection; and cytoplasm. Predicted to be part of Arp2/3 protein complex. Orthologous to human ARPC2 (actin related protein 2/3 complex subunit 2).

NR:

description
PREDICTED: actin-related protein 2/3 complex subunit 2

GO:

id name namespace
GO:0030833 regulation of actin filament polymerization biological_process
GO:0005856 cytoskeleton cellular_component

KEGG:

id description
K05758 ARPC2; actin related protein 2/3 complex, subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007244237.3 True 1954 mRNA 0.42 10 8353176 8371385

Neighbor

gene id symbol gene type direction distance location
inha inha,LOC107586362 coding upstream 328603 8021047 ~ 8024573 (+)
obsl1 NA coding upstream 407037 7910585 ~ 7946139 (+)
slc19a1 slc19a1 coding upstream 499113 7843175 ~ 7854063 (+)
LOC103042636 rbm46 coding upstream 568082 7779301 ~ 7785094 (+)
LOC103044198 ccdc80,LOC108437683,LOC107565956 coding upstream 676089 7668378 ~ 7677087 (+)
LOC103042259 NA coding downstream 9735 8381120 ~ 8389184 (+)
LOC103041643 LOC108436449,LOC107749392,LOC107678319 coding downstream 47713 8419098 ~ 8502565 (+)
LOC103021389 LOC108436447,LOC103363665,LOC106926458,LOC106956952 coding downstream 233599 8604984 ~ 8610336 (+)
LOC103044816 LOC108412428 coding downstream 328461 8699846 ~ 8703563 (+)
LOC103040732 NA coding downstream 376671 8748056 ~ 8759638 (+)
G109666 NA non-coding upstream 164602 8184650 ~ 8188574 (+)
G109661 NA non-coding upstream 200796 8104297 ~ 8152380 (+)
G109642 NA non-coding upstream 257358 8008587 ~ 8095818 (+)
G109651 NA non-coding upstream 303790 8048492 ~ 8049386 (+)
G109650 NA non-coding upstream 305135 8046942 ~ 8048041 (+)
G109691 NA non-coding downstream 28382 8399767 ~ 8477373 (+)
G109708 NA non-coding downstream 182025 8553410 ~ 8555795 (+)
G109709 NA non-coding downstream 240169 8611554 ~ 8640836 (+)
G109726 NA non-coding downstream 282091 8653476 ~ 8667907 (+)
G109751 NA non-coding downstream 297109 8668494 ~ 8669506 (+)
G109669 LOC108438163 other upstream 153199 8196970 ~ 8199977 (+)
igfbp2 LOC108438161 other upstream 228304 8092279 ~ 8124872 (+)
G109613 NA other upstream 491744 7860820 ~ 7861432 (+)
LOC103043571 NA other upstream 652870 7697110 ~ 7700306 (+)
gbx2 gbx2,LOC107596335,LOC103389863 other upstream 904186 7441969 ~ 7448990 (+)
G109707 NA other downstream 178729 8550114 ~ 8561274 (+)
LOC103038228 pbx1,pbx1b,LOC108272157,LOC108443834,LOC104918287,LOC107677498 other downstream 1145090 9516475 ~ 9630237 (+)
G110492 trak2,LOC108430857,LOC107746594,LOC108271640,LOC107582328 other downstream 2593480 10964865 ~ 10973269 (+)
G110694 LOC108444448 other downstream 3977735 12349120 ~ 12835727 (+)
G110974 lrrc8db,LOC108413222,LOC108272026,LOC107749977,LOC107698886,LOC107730703,LOC107555394,LOC107564626 other downstream 5662712 14034097 ~ 14047930 (+)

Expression


Co-expression Network