G109709


Basic Information

Item Value
gene id G109709
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 8611554 ~ 8640836 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU148240
TTCAAactttattttggtaaaatcatacaATAAGTGTTCTCGTGCAGTGCACAGCTTCTAAACTAGTACATAAAGCAAATTCTAATTCTAAGGGCTCCGGTGATGTTCTTTGTCATGGTTTGGTGAATTGAGAGCTTGTCTTGAGCTGTTCACCCCTTTTTTTGTTCCTTAAGActtaaagaagaagaattcACCACCAAACCAGGAAGAGAACAGTATTTCCAAATGCCCAATTTCTGCAAATGCAACAATAGAGAGAATAACCACATGTTTTCCGTAAGATTGCCATGTGCCAGACATTCACTGAGGGGGAAAATAattcaaacaattaaaaattaaaaaataaagaaaaagaaaaaaaataaactggacAATCTGGACACTTTGCACtgttttttgtacatatttaggAAAAATGTTTTGATCTTTTGTCCAAACCTTGGCATTTAGTTGTTAGCTTTTAAATTTTGGCTGCCAATTACAAGTGTGACTGAAATACTTGGCCCTTGAGGCTACAAATATGGATTTTTGACGGAGTCCAAAATGACCTTAAACTTTAAAAAGCTCACACTACCCCGAAATATATAAATTTCACGCATACGGGTGACATTCAACATTCAAGTGCCAGTGTTTTTGTACTGTCTTTTGGTCAAGTTACTTGAAACGATCACTTTTaggtttataaaaataaatatttctcaaAAATGCTCAATAAATTACACAAACTAGCAGCAAAAGTAGAATCTAGTAATCCGTGTGCAAATAGCTAAATTCCCCACTGCTGATTCCCTGGTCCCAAATCGATCCTGGTTAAATATTGAGAACCCTTCCCCTTTTGTAAACAagctgcgttttttttttttattattttacagtctTCACACACAATTATTTGGAAGCTTAAGGACACGCACTCAAGAAGACATTTATATAAAACTCTAGATGTGcaataaaagaacatttttcTGTAAAACTCGATGGGCATAACATACACGGGCCTAGACCTAAATAGCACCACTCATTTCAAGTTACCACAATACTGTCAGTGCATCCGCTTCAGTTCACCATTTCTCACACTTCTTTAAAATGTCAAAGGCACAACACGCATGAGAGGAAATCTATTGCACTTCAGTTCAATGTAGTATCCTGCCCATCCTCCTAACACCTCGCctgccgagagagagagagcgagcgcgaGAGGCGAGCGCTGCCGCCAGTTACTCTGACTTAATCTCCACAGTACCGCACAGCAGCTCAACTGCTGTAGATTACAGTAACGGGAGAAATGGGTGAAGAACTGTAACCCTGTCTTTGGCCAGGATGCCATGAAAACCTCATCCAcgacaacaaaaagaaaataataaaagtgttaTGCCAAAAACTGCAATCCTACCAGCCTTTGCCTCCTCACCCTGTGCAGTTCCTTTTCCTGTGTACATTCCTGATTTTATCCAGCCCCTGTTTACCCCAAGCTCCTGTGGGGGATCTCAGGGGAACCATGTCTCTAGTGCAAGCCCGAGGATGTCTTTTCGAAATGCAACGCAGCTTGGGAAAAGAGAGGACACAAAATAAACGAAAGTCCGGATGACGACattctttataaaataaaagcctgCTGCAGAAATTTGATTGAAAATCTCCTTgaccaaaaaacaacaacactagCATGCGAATTACTGCAGAGTCAGCTGGGCGTTTAGGGCCAGTCTACTCTGATGCTGTGATCCTAATATATAAATGTAGCCATTTGTCCTTTTCGCTATGGCAGTAGCTTGGAGTACACCATTTCATTaaagaatacaaataaaacaatccaAAACAGCCAGCTCCACAATAGTTCAAGTAAGAAAACAATGAAGAAACTACCTCCATTCCTCCAAACTAGCTAGAGTCTGTGGCACCGAGCTAGCTGCCTGAAAAACGTTACGATTCAGAAGTGGGAGCGTTTGAGCGTCACACGTCCAAACACCAAATCGTGAACGGAGGTTCACACCTCTGTTCACtaaacctcctcctcctcaggaCTATGGATAAATATTAAGAGATCAGAAACTGGAatggcttttatttttattttaaacctcCCGCAGACGACGACCGCGTCCTTAAGAGGCACCACCTCAGGATAGTGAGCGCAAGATTAACATCATCATTAATCACTAATGACTTCCTTCTCCTGCAACACGTTTTCTTTGTCGAGCAAGAGTAAAAGCCAATAGAGGGAGGGCCAGGCCCAGGCACCTTTGCGACAGCAGCCTGGTGACCCCGTGACAAATTTGAAGTTCAGAACAAGATAGTGACTCGAAGAGAGTCAGACCATCCCAGAGTTTGCCAAGGTTTGATTGAGCACAAGCTGAAATTTTCTTACcttcaaaaaacaaacatggagaaaagagaaaagaaagaaagcaaacaataaaaaccacAATCGTGGCCAAGTGTTAGCCAGTCTGACGtttaaaaaggaacaaaaagaaCaaacacaaaaaaagggtTACTATTTACCCATACAATCTATTCTTTaatccaaaaacaaacaaagtgtTTTGATATACATCCAAtaggttttatttttccattccaccttaaatactgcagtCTCTGCCATCTGCTGCACcacttaaggtggaatagaaaaGTGAGACTACTGAAACGAACTACTAATGAGTTGTTAATGCTATTAAATAGgctataaaacattgaaacttaCATTAAACCATGATATCGCTTGTGgttatcatttttaaacaagGAATATGCTCAAATTTGATTTCTTTGGTTGCTTTTTTGAGCATGACGCTGGACCTTTCATGCTTTAATGAATCATTTTACAACCCATGTAACTTTctagggagaaaaaaaaaaaatctatacaataaaaaaaaaagttttgtggAGATTTTAACCCTAAAACATTTACAGGCATGTTTCCACAGTAAGTGGGATAGACTTAAGTGAATGAGCAGTTGTTTATTGAATTTCTGATTGAATACTGAATTTGATACCAATATTCAGAACAGGGTCTGGGCTCTTAAGCATCAGCAACTCTGGACCGTTCTGTATTTACCGGCGTTTTGTGTTGGCTGGAAAGAGCCAGTGCCCCTGCCTCTGAAACTACCGGCACCTCTGCCCCCACGGTCGTTGCGTACGGGCCCACCACGGCTGCCGAAAGTGCTGCCTCCATTCATACGGTTGTCACGGTTATCATGGTAGCCATTTACGAATCCATTGCTGCGACCACCATCCCAGCCACCAGGAGAATCTTTTTGGAAACCTCCTTGTTCCTTAAATGAGGTGGAATGTAACGCCTGCCAGTACCTCCTCCCTGCACATCAGAGTTCAAGTCTAGGACAGCcagCTGCTGGTCTAGACCGTGTACATTTTCGACGGCCACATGACTCATAACTAAAGAGGAGTGAGGAGAGGATTCTCGGAGAAAGAGCTTCTTTGTTCGCCGGTTTTTTAGTTAGCTCTGCTTTTCCACTAAGATTTATCGACGtttctctgtttaaactatCAAACTGTAAAGAATAATCGACACTAGATAGATTACACGACACGTAAAACAGCTGATACTCGTCTTTAACACTATTTCTGAGCCCTAAAAGTAAAGTATTCCCCCTTTAAACCTCGCCTGAATTTGAGCTAAGCTCCTCAGATACAGACTCTCTCCGTGTCC
>TU148241
TTCAAactttattttggtaaaatcatacaATAAGTGTTCTCGTGCAGTGCACAGCTTCTAAACTAGTACATAAAGCAAATTCTAATTCTAAGGGCTCCGGTGATGTTCTTTGTCATGGTTTGGTGAATTGAGAGCTTGTCTTGAGCTGTTCACCCCTTTTTTTGTTCCTTAAGActtaaagaagaagaattcACCACCAAACCAGGAAGAGAACAGTATTTCCAAATGCCCAATTTCTGCAAATGCAACAATAGAGAGAATAACCACATGTTTTCCGTAAGATTGCCATGTGCCAGACATTCACTGAGGGGGAAAATAattcaaacaattaaaaattaaaaaataaagaaaaagaaaaaaaataaactggacAATCTGGACACTTTGCACtgttttttgtacatatttaggAAAAATGTTTTGATCTTTTGTCCAAACCTTGGCATTTAGTTGTTAGCTTTTAAATTTTGGCTGCCAATTACAAGTGTGACTGAAATACTTGGCCCTTGAGGCTACAAATATGGATTTTTGACGGAGTCCAAAATGACCTTAAACTTTAAAAAGCTCACACTACCCCGAAATATATAAATTTCACGCATACGGGTGACATTCAACATTCAAGTGCCAGTGTTTTTGTACTGTCTTTTGGTCAAGTTACTTGAAACGATCACTTTTaggtttataaaaataaatatttctcaaAAATGCTCAATAAATTACACAAACTAGCAGCAAAAGTAGAATCTAGTAATCCGTGTGCAAATAGCTAAATTCCCCACTGCTGATTCCCTGGTCCCAAATCGATCCTGGTTAAATATTGAGAACCCTTCCCCTTTTGTAAACAagctgcgttttttttttttattattttacagtctTCACACACAATTATTTGGAAGCTTAAGGACACGCACTCAAGAAGACATTTATATAAAACTCTAGATGTGcaataaaagaacatttttcTGTAAAACTCGATGGGCATAACATACACGGGCCTAGACCTAAATAGCACCACTCATTTCAAGTTACCACAATACTGTCAGTGCATCCGCTTCAGTTCACCATTTCTCACACTTCTTTAAAATGTCAAAGGCACAACACGCATGAGAGGAAATCTATTGCACTTCAGTTCAATGTAGTATCCTGCCCATCCTCCTAACACCTCGCctgccgagagagagagagcgagcgcgaGAGGCGAGCGCTGCCGCCAGTTACTCTGACTTAATCTCCACAGTACCGCACAGCAGCTCAACTGCTGTAGATTACAGTAACGGGAGAAATGGGTGAAGAACTGTAACCCTGTCTTTGGCCAGGATGCCATGAAAACCTCATCCAcgacaacaaaaagaaaataataaaagtgttaTGCCAAAAACTGCAATCCTACCAGCCTTTGCCTCCTCACCCTGTGCAGTTCCTTTTCCTGTGTACATTCCTGATTTTATCCAGCCCCTGTTTACCCCAAGCTCCTGTGGGGGATCTCAGGGGAACCATGTCTCTAGTGCAAGCCCGAGGATGTCTTTTCGAAATGCAACGCAGCTTGGGAAAAGAGAGGACACAAAATAAACGAAAGTCCGGATGACGACattctttataaaataaaagcctgCTGCAGAAATTTGATTGAAAATCTCCTTgaccaaaaaacaacaacactagCATGCGAATTACTGCAGAGTCAGCTGGGCGTTTAGGGCCAGTCTACTCTGATGCTGTGATCCTAATATATAAATGTAGCCATTTGTCCTTTTCGCTATGGCAGTAGCTTGGAGTACACCATTTCATTaaagaatacaaataaaacaatccaAAACAGCCAGCTCCACAATAGTTCAAGTAAGAAAACAATGAAGAAACTACCTCCATTCCTCCAAACTAGCTAGAGTCTGTGGCACCGAGCTAGCTGCCTGAAAAACGTTACGATTCAGAAGTGGGAGCGTTTGAGCGTCACACGTCCAAACACCAAATCGTGAACGGAGGTTCACACCTCTGTTCACtaaacctcctcctcctcaggaCTATGGATAAATATTAAGAGATCAGAAACTGGAatggcttttatttttattttaaacctcCCGCAGACGACGACCGCGTCCTTAAGAGGCACCACCTCAGGATAGTGAGCGCAAGATTAACATCATCATTAATCACTAATGACTTCCTTCTCCTGCAACACGTTTTCTTTGTCGAGCAAGAGTAAAAGCCAATAGAGGGAGGGCCAGGCCCAGGCACCTTTGCGACAGCAGCCTGGTGACCCCGTGACAAATTTGAAGTTCAGAACAAGATAGTGACTCGAAGAGAGTCAGACCATCCCAGAGTTTGCCAAGGTTTGATTGAGCACAAGCTGAAATTTTCTTACcttcaaaaaacaaacatggagaaaagagaaaagaaagaaagcaaacaataaaaaccacAATCGTGGCCAAGTGTTAGCCAGTCTGACGtttaaaaaggaacaaaaagaaCaaacacaaaaaaagggtTACTATTTACCCATACAATCTATTCTTTaatccaaaaacaaacaaagtgtTTTGATATACATCCAAtaggttttatttttccattccaccttaaatactgcagtCTCTGCCATCTGCTGCACcacttaaggtggaacaaaagtAAGCTACCTACTGAAATGAACTACTagtgagtttttatttttgtgaagaaaaattGGCATTGAAGCtacatattaaattacagtcataaagctctgaaaaatCAGTTTTAAGGGTCATGTAGTCCCAACATCCCCCTCCAGTCTAACGAAAAATGGGACACTCTACCCCTACACCTGAacacgcaaaacagaggggtagggatAAATTATGGAACCAAggtggtgaaatgggattgggcacTAATCTTCCCAGATTAAGGCCTACCATATGCAGACAACATTAATAATCATCATCAAAAAGGAACCATAAATCCAGTATCAGATTTCATACAAACCACAAGCTTTAGCCAGCTATTTGGTTAGCTATGGTGCAATTAAAACACCAATCATCATCACCAACCCATGCAAAAGCTTGTTTTTGTCTGAGCACACTTGTTATTAGCAAGCCCACAACAATCACCTCCAAAATTCCAAACTACAGATATTTAGTCAGCAAAAAGGGCACTATATCATTTGCATTGAATATGCATTGAGCATATGGACAAGAGACAAACAGTTTCCCTAGCAAAAGCCTTCAGAACAGAGACTTACAGCTCCTTCCTAGTGGCACTGAGTAATCACTACCACAGGAATAAGATCCTGCTAAAAGAAACGTTTGTATAGTAAAGAGCATGTTCAGGCAATGGAGGCAAAACAGATGAAACTGATTTGTCTTGAGGATTTGCTGAATCTttgccctctagtggacataTATTAACACAATGTCAACGTAAAGGACGTGATTGAAACTGATTTAACCCTTTAtgtatataattacattttaaaggaa
>TU148244
TTCAAactttattttggtaaaatcatacaATAAGTGTTCTCGTGCAGTGCACAGCTTCTAAACTAGTACATAAAGCAAATTCTAATTCTAAGGGCTCCGGTGATGTTCTTTGTCATGGTTTGGTGAATTGAGAGCTTGTCTTGAGCTGTTCACCCCTTTTTTTGTTCCTTAAGActtaaagaagaagaattcACCACCAAACCAGGAAGAGAACAGTATTTCCAAATGCCCAATTTCTGCAAATGCAACAATAGAGAGAATAACCACATGTTTTCCGTAAGATTGCCATGTGCCAGACATTCACTGAGGGGGAAAATAattcaaacaattaaaaattaaaaaataaagaaaaagaaaaaaaataaactggacAATCTGGACACTTTGCACtgttttttgtacatatttaggAAAAATGTTTTGATCTTTTGTCCAAACCTTGGCATTTAGTTGTTAGCTTTTAAATTTTGGCTGCCAATTACAAGTGTGACTGAAATACTTGGCCCTTGAGGCTACAAATATGGATTTTTGACGGAGTCCAAAATGACCTTAAACTTTAAAAAGCTCACACTACCCCGAAATATATAAATTTCACGCATACGGGTGACATTCAACATTCAAGTGCCAGTGTTTTTGTACTGTCTTTTGGTCAAGTTACTTGAAACGATCACTTTTaggtttataaaaataaatatttctcaaAAATGCTCAATAAATTACACAAACTAGCAGCAAAAGTAGAATCTAGTAATCCGTGTGCAAATAGCTAAATTCCCCACTGCTGATTCCCTGGTCCCAAATCGATCCTGGTTAAATATTGAGAACCCTTCCCCTTTTGTAAACAagctgcgttttttttttttattattttacagtctTCACACACAATTATTTGGAAGCTTAAGGACACGCACTCAAGAAGACATTTATATAAAACTCTAGATGTGcaataaaagaacatttttcTGTAAAACTCGATGGGCATAACATACACGGGCCTAGACCTAAATAGCACCACTCATTTCAAGTTACCACAATACTGTCAGTGCATCCGCTTCAGTTCACCATTTCTCACACTTCTTTAAAATGTCAAAGGCACAACACGCATGAGAGGAAATCTATTGCACTTCAGTTCAATGTAGTATCCTGCCCATCCTCCTAACACCTCGCctgccgagagagagagagcgagcgcgaGAGGCGAGCGCTGCCGCCAGTTACTCTGACTTAATCTCCACAGTACCGCACAGCAGCTCAACTGCTGTAGATTACAGTAACGGGAGAAATGGGTGAAGAACTGTAACCCTGTCTTTGGCCAGGATGCCATGAAAACCTCATCCAcgacaacaaaaagaaaataataaaagtgttaTGCCAAAAACTGCAATCCTACCAGCCTTTGCCTCCTCACCCTGTGCAGTTCCTTTTCCTGTGTACATTCCTGATTTTATCCAGCCCCTGTTTACCCCAAGCTCCTGTGGGGGATCTCAGGGGAACCATGTCTCTAGTGCAAGCCCGAGGATGTCTTTTCGAAATGCAACGCAGCTTGGGAAAAGAGAGGACACAAAATAAACGAAAGTCCGGATGACGACattctttataaaataaaagcctgCTGCAGAAATTTGATTGAAAATCTCCTTgaccaaaaaacaacaacactagCATGCGAATTACTGCAGAGTCAGCTGGGCGTTTAGGGCCAGTCTACTCTGATGCTGTGATCCTAATATATAAATGTAGCCATTTGTCCTTTTCGCTATGGCAGTAGCTTGGAGTACACCATTTCATTaaagaatacaaataaaacaatccaAAACAGCCAGCTCCACAATAGTTCAAGTAAGAAAACAATGAAGAAACTACCTCCATTCCTCCAAACTAGCTAGAGTCTGTGGCACCGAGCTAGCTGCCTGAAAAACGTTACGATTCAGAAGTGGGAGCGTTTGAGCGTCACACGTCCAAACACCAAATCGTGAACGGAGGTTCACACCTCTGTTCACtaaacctcctcctcctcaggaCTATGGATAAATATTAAGAGATCAGAAACTGGAatggcttttatttttattttaaacctcCCGCAGACGACGACCGCGTCCTTAAGAGGCACCACCTCAGGATAGTGAGCGCAAGATTAACATCATCATTAATCACTAATGACTTCCTTCTCCTGCAACACGTTTTCTTTGTCGAGCAAGAGTAAAAGCCAATAGAGGGAGGGCCAGGCCCAGGCACCTTTGCGACAGCAGCCTGGTGACCCCGTGACAAATTTGAAGTTCAGAACAAGATAGTGACTCGAAGAGAGTCAGACCATCCCAGAGTTTGCCAAGGTTTGATTGAGCACAAGCTGAAATTTTCTTACcttcaaaaaacaaacatggagaaaagagaaaagaaagaaagcaaacaataaaaaccacAATCGTGGCCAAGTGTTAGCCAGTCTGACGtttaaaaaggaacaaaaagaaCACACAAAAAAGGTCAAATTTAAAGGCACAGTACATTAACGAACAAATGATTCTCGATTACTACGAAGAAAGCAATGAGGTGTGGTGGAAAAACGAGTCAAAAAGATCCTAATTAAgtatatttctgcatttttcCCTCCGTTTTCTTTCTACAGACGAGCAGGTCTGGAGACTGGTTCCCCTGCGGCCAAACCTTCAATCACCCTGGCAAGCCCATCTTCTACAGCCAGTGGTACGCTTCATTTTGGGATGTGGTCAGAGAATCACAGCTGGTAATGTACTGTAGAGTTCTTGAAAGCTACACAGGGTAAATAGTCTGGCTAAAGTTACATGTGGTTTCCATTCAGTGAGTTCGGCGTGGTAACCCACTGATCACGGGGAGTGGGGTTTGGAAAGATGGAaagggggggggggggggg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU148240 True 3679 lncRNA 0.41 5 8611554 8626873
TU148241 False 3467 lncRNA 0.40 3 8611554 8622491
TU148244 False 2896 lncRNA 0.41 2 8611554 8640836

Neighbor

gene id symbol gene type direction distance location
LOC103021389 LOC108436447,LOC103363665,LOC106926458,LOC106956952 coding upstream 1218 8604984 ~ 8610336 (+)
LOC103041643 LOC108436449,LOC107749392,LOC107678319 coding upstream 108989 8419098 ~ 8502565 (+)
LOC103042259 NA coding upstream 222370 8381120 ~ 8389184 (+)
arpc2 arpc2,LOC106575630,LOC106574678 coding upstream 240169 8353176 ~ 8371385 (+)
inha inha,LOC107586362 coding upstream 586981 8021047 ~ 8024573 (+)
LOC103044816 LOC108412428 coding downstream 59010 8699846 ~ 8703563 (+)
LOC103040732 NA coding downstream 107220 8748056 ~ 8759638 (+)
wbp4 NA coding downstream 140585 8781421 ~ 8786723 (+)
LOC103042871 LOC103042871 coding downstream 151575 8792411 ~ 8798881 (+)
ccdc122 NA coding downstream 160643 8801479 ~ 8806036 (+)
G109708 NA non-coding upstream 55759 8553410 ~ 8555795 (+)
G109691 NA non-coding upstream 134181 8399767 ~ 8477373 (+)
G109666 NA non-coding upstream 422980 8184650 ~ 8188574 (+)
G109661 NA non-coding upstream 459174 8104297 ~ 8152380 (+)
G109651 NA non-coding upstream 562168 8048492 ~ 8049386 (+)
G109726 NA non-coding downstream 12640 8653476 ~ 8667907 (+)
G109751 NA non-coding downstream 27658 8668494 ~ 8669506 (+)
G109753 NA non-coding downstream 92665 8733501 ~ 8734783 (+)
G109765 fbxl3,LOC107750836,LOC106513965,LOC107549764,LOC107703114 non-coding downstream 99226 8740062 ~ 8740589 (+)
G109929 NA non-coding downstream 152397 8793233 ~ 8793371 (+)
G109707 NA other upstream 50280 8550114 ~ 8561274 (+)
G109669 LOC108438163 other upstream 411577 8196970 ~ 8199977 (+)
igfbp2 LOC108438161 other upstream 486682 8092279 ~ 8124872 (+)
G109613 NA other upstream 750122 7860820 ~ 7861432 (+)
LOC103043571 NA other upstream 911248 7697110 ~ 7700306 (+)
LOC103038228 pbx1,pbx1b,LOC108272157,LOC108443834,LOC104918287,LOC107677498 other downstream 875639 9516475 ~ 9630237 (+)
G110492 trak2,LOC108430857,LOC107746594,LOC108271640,LOC107582328 other downstream 2324029 10964865 ~ 10973269 (+)
G110694 LOC108444448 other downstream 3708284 12349120 ~ 12835727 (+)
G110974 lrrc8db,LOC108413222,LOC108272026,LOC107749977,LOC107698886,LOC107730703,LOC107555394,LOC107564626 other downstream 5393261 14034097 ~ 14047930 (+)
G111146 hs2st1b,LOC108427652,LOC107593177,LOC107694133,LOC107740348,LOC107679861,LOC107751310 other downstream 6116557 14757393 ~ 14761826 (+)

Expression


Co-expression Network