LOC103044816 (LOC108412428)


Basic Information

Item Value
gene id LOC103044816
gene name LOC108412428
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 8699846 ~ 8703563 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007244220.3
AGTGCGAGCAGCAGCACTCTCAGACAGAGAAAGGAAGGACCGACAGCAGCGAGTGAGCAGGAGAAAGAAGAAGcgtgagagcaagagaaagcGTGAGAGCGATAGACGGAAGACAGAAGACAAGTCTGTGACAGACAGCTCCCATTCCAGTAACATGACTAGGGGAGAGGAGAAGACAGCAACTTGGACATAAagcgaaaaacagtaaaaagtgtctGGAAAAAGAGTGAAGAAAAAAGACGCATGCATGCAGAGATACAACAGCTGTTTCTGCCGCGAATGAGTTAACAGAGCTGAAGATATAAGCCCTGAACCTTtcgaagagaaaaaagaggaagtgaaaaaaaaaacacgcacaCGATGACCACCTTTAACCACACTGGAATGCTGTTGAACACATCCATCGGCCCACAGAGAGACTCAGACCTCAACCAATCGTGTTCTTTGGAGGAGGAATCGCTGCGTGTGCCTTTTGCTGTTCTGTACTCCCTCCTCTTCCTGTTTGGCCTGGCAGGGAATGTTCTAGCCCTCTGGGTCTTCCTCTTTCTGCACTCGCGCCACAACTCCGTCCGGGTTTTTCTAATCAACGTAGCTCTGGCTGACCTGGTGCTGGTGGCATGCCTACCGTTTCGTGTCCTCTACCACGCAATGGGCAACTACTGGCCGCTGGGTCCACGCATGTGCAAGGTTGTGGGCAACCTCTTCTACATGAACATGTATGTGAGCATCACACTGCTGGGCCTCATCAGCCTGGACCGATATGTGAAGATTCAAGGAGTGCGGAGGGCCTGCTGCCGCCGCTGGCTGAGGGGTAGCGCCTGGAGCGTGGCGGCTTGTGTATTTCTGTGGGTGGGCTCTCTGGTGGCTGTGGTGCCTATGATCGCCCTGGCTGAAGGAAATGAGGAGCAGGGAAAGTGCTTCCAGTACAAGGCTCGCACAAAGGCCCGCGGAAAGGCCTATTTCAATCTCCTCCTGGTGGGCGTCTTCTGGCTGGTGTTTATTCTGCTGGTGGCTTCATACGCGCGAATTGCTTTGCGTCTCTTACGAGCGTCACGTGACAAACCGGACCTGCCCAATGCTATGCGTTACAGCCGCACGGCTAAGAAGTCCTTTGTGGTGCTATTCCTGTTCACCATCTGCTTTGTGCCGTATCACTCTTTCAGGGGCTTCTACATACAGTCCCAGTTGAGCGAGACATCCTGCGAGATGCGGCGTCTCATGGACCGAACCAACGAAGTCATGCTGCTCTTCTCAGCCCTCAACAGCTGCCTGGACCCGGTGATGTACTTCATGCTCTCGGGATCAGTGCGCAAGGCTGCGATCAGAGCCTTGTCTCGGGTGTGCCAGGTTCAGCCGGATCACACAAATATGGTCAACAGCTCCACCACAGAGTTCCGCAGGACGTCACTATCGCAGGCCTCCACCACCGCACTGGCTACGCCACGCGGGAGCGTAGGGCTCATAACCACCCTTCGTACCACCCCTTCCCATCCAAAGGGCAGGCggtaaaaagaagaagaaagtaaGGTCCTGCAAACATCCTGCAATAAAAGGCCTAGCCTTTCTGATGGGTTGCAGAAGAATGCAAAAGCAGAGTTCATAACAATTCCTGACAGTATCTCCTACAGTATGTATTCAATATCTACTTTATGTTCTTCTACTGTATACATGAGGCAAAAGGAATATGCAGGAATCTCTTTCTGACTATGAACTGTGATGGGAAAAGCTGGATTACTAAGttcagtaagaaaaaaaaagacaaaagactcCAGGAAAAACATCTgtcctggaaaaaaatacaacagaatTCTAGTACTAGTGCAAAAAAGCGACAGCAACAGCTGTGGAGACTTGCCGAAGCCAATAAGTGACTTGCTGCAGTGAGAATGCAACAGATTGGAGATTCTGACACTCTCAGATAATAGGAACACTTGTGCATTATAAGGAACAAAAGATCAATTTTTAAGGGACTTGTGTACATATTCGGTGAGCCACAGTGGTAGTGCTAGGAGGCTGGGGCTTACACACACTTACGTCCTTTATTTCTCATGTTCTTTATTCAAACCTgcatatattgtgtaaaatatttactaaaaactaaaacatgatATTTAGGTTAAGCTTGTTGATTGGTCATGCACAGTACAGTCAAAAAACTGACACAGCTAGCTGGTTCCATTAACATTACTGTTAATTGTTAGTCTATTGTACGCCTGAATGATATGCTTAAATCTTGAGCTGTCCATATCTTTTGTTTTGTCATGATGAACTATTGTCTCTGAATGATACAAATGATACAATCCCCCAAAAATTCCTGTGATGAATTccattattaaattacattatacaGTTTTCCTAAGATTTTATAATAcagataatattaaaataaagaaatataataatGCACTTATACCTTATGTCATAAAAGCAATTAACTAGACAACATAAA

Function

NR:

description
PREDICTED: probable G-protein coupled receptor 34

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K08383 GPR34; G protein-coupled receptor 34

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007244220.3 True 2449 mRNA 0.46 2 8699846 8703563

Neighbor

gene id symbol gene type direction distance location
LOC103021389 LOC108436447,LOC103363665,LOC106926458,LOC106956952 coding upstream 89510 8604984 ~ 8610336 (+)
LOC103041643 LOC108436449,LOC107749392,LOC107678319 coding upstream 197281 8419098 ~ 8502565 (+)
LOC103042259 NA coding upstream 310662 8381120 ~ 8389184 (+)
arpc2 arpc2,LOC106575630,LOC106574678 coding upstream 328461 8353176 ~ 8371385 (+)
inha inha,LOC107586362 coding upstream 675273 8021047 ~ 8024573 (+)
LOC103040732 NA coding downstream 44493 8748056 ~ 8759638 (+)
wbp4 NA coding downstream 77858 8781421 ~ 8786723 (+)
LOC103042871 LOC103042871 coding downstream 88848 8792411 ~ 8798881 (+)
ccdc122 NA coding downstream 97916 8801479 ~ 8806036 (+)
gpr180 gpr180 coding downstream 159333 8862896 ~ 8871217 (+)
G109751 NA non-coding upstream 30340 8668494 ~ 8669506 (+)
G109726 NA non-coding upstream 31939 8653476 ~ 8667907 (+)
G109709 NA non-coding upstream 59010 8611554 ~ 8640836 (+)
G109708 NA non-coding upstream 144051 8553410 ~ 8555795 (+)
G109691 NA non-coding upstream 222473 8399767 ~ 8477373 (+)
G109753 NA non-coding downstream 29938 8733501 ~ 8734783 (+)
G109765 fbxl3,LOC107750836,LOC106513965,LOC107549764,LOC107703114 non-coding downstream 36499 8740062 ~ 8740589 (+)
G109929 NA non-coding downstream 89670 8793233 ~ 8793371 (+)
G109971 NA non-coding downstream 145235 8848798 ~ 8850504 (+)
G109981 NA non-coding downstream 179014 8882577 ~ 8938362 (+)
G109707 NA other upstream 138572 8550114 ~ 8561274 (+)
G109669 LOC108438163 other upstream 499869 8196970 ~ 8199977 (+)
igfbp2 LOC108438161 other upstream 574974 8092279 ~ 8124872 (+)
G109613 NA other upstream 838414 7860820 ~ 7861432 (+)
LOC103043571 NA other upstream 999540 7697110 ~ 7700306 (+)
LOC103038228 pbx1,pbx1b,LOC108272157,LOC108443834,LOC104918287,LOC107677498 other downstream 812912 9516475 ~ 9630237 (+)
G110492 trak2,LOC108430857,LOC107746594,LOC108271640,LOC107582328 other downstream 2261302 10964865 ~ 10973269 (+)
G110694 LOC108444448 other downstream 3645557 12349120 ~ 12835727 (+)
G110974 lrrc8db,LOC108413222,LOC108272026,LOC107749977,LOC107698886,LOC107730703,LOC107555394,LOC107564626 other downstream 5330534 14034097 ~ 14047930 (+)
G111146 hs2st1b,LOC108427652,LOC107593177,LOC107694133,LOC107740348,LOC107679861,LOC107751310 other downstream 6053830 14757393 ~ 14761826 (+)

Expression


Co-expression Network