G109971


Basic Information

Item Value
gene id G109971
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 8848798 ~ 8850504 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU148694
AAAAATGTCAAACAAAACCTCAAACTCAAACagtttattacaaattattttgCAAAGTCATTTATATGGCATCACTGGTGACCCCTGGGAGCTCCCAGATATCATCATCGTATATTGATATGATGGGGCGAACATGCTTCTCTTCATCTTTAGGCATTTTTGCCTCATCGTGCTCAGCTGCCTCTTCAGCCAATGAAACATTACACTCGTTCTTAAGTCCTTGGAGTGTAATATTTTCTTGAATAGACTGCTGGGATGTGTGTTCATTAGAACTCGAGCTCATTGAAACCTTTAAATCCTCCTGCTGTGGTGCATTTTGTGATGTATGGCAGTGCTCATACAGATCTACTATGTCTGTGGGCTTGCTGGATTGATCTTCATCCTGTGGTAGCTTGCTGGAACATTTATCAGCTAGTGAGCtattcacatttaaaactgGAAGTCCCTTTGGCTGATGGGTTTCTGATAGGCTTCGAATAACTCTACTGGAGTCCGCCCTACTGCAGAGCTTTAGATCTTCTGTGTAATGTCTCTGGTTATCCGGTGACTCAAAGGAAAGTTTCTTTTCCTGTGTCTGACTTGCCTGACAACCATTCACCACAAGCGAACGCTGTGTTTCAGTGACACTTCCCTCTGTTACACCACTTCCACAGTCCTCTTTATCAGTCATCAGTCCATTCGTACTTACTGCTGCAGTTTCAGACATCATTGGGTTACAGTTATCAGAAGCGAGTCCGAAGAATCCTTTACGCACAATAAAGCGAATGCACTGAAGCACAACGTTTCTTTCATGGCGAATGTCGGAAGCCAACAACATCTCTAAAAGGGTGTGGCGACGGTTCTGTGGAACACTGGTGGGGTTATTACCACCTCTTCCACCCCTACCACGACCACGCCCCCTTTTGCCTCTGCCACACCAcctgtttctctggtctgagACAGGATAAGGTGCTTGGTGGTCAGTCTCAGATTGCCTGATTGGTGGTTCCTTGTTAAGACTCTGTGCACTGTACTGAGCAGGAACAGAAAGACCTGCCAGCAAGGCCTTGTTCTCCTCCAAAGCCTGAGCTGTTTTCAAGAGAGGGGAAtctaaaattgagaaaaaaaataacatcaacCAACACAGAAATCTATCAAACCAATACAAAAACATAGGGAAAAATGAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU148694 True 1167 lncRNA 0.44 2 8848798 8850504

Neighbor

gene id symbol gene type direction distance location
ccdc122 NA coding upstream 42762 8801479 ~ 8806036 (+)
LOC103042871 LOC103042871 coding upstream 49917 8792411 ~ 8798881 (+)
wbp4 NA coding upstream 62075 8781421 ~ 8786723 (+)
LOC103040732 NA coding upstream 89160 8748056 ~ 8759638 (+)
LOC103044816 LOC108412428 coding upstream 145235 8699846 ~ 8703563 (+)
gpr180 gpr180 coding downstream 12392 8862896 ~ 8871217 (+)
LOC103039687 cldn10a,LOC108436398,LOC107551926,LOC107659956,LOC107581434,LOC108272592,LOC106097921 coding downstream 81521 8932025 ~ 8935776 (+)
LOC103038864 NA coding downstream 88883 8939387 ~ 8942765 (+)
LOC103039383 NA coding downstream 94292 8944796 ~ 8949836 (+)
hs6st3 hs6st3 coding downstream 131325 8981829 ~ 9004451 (+)
G109929 NA non-coding upstream 55427 8793233 ~ 8793371 (+)
G109765 fbxl3,LOC107750836,LOC106513965,LOC107549764,LOC107703114 non-coding upstream 108209 8740062 ~ 8740589 (+)
G109753 NA non-coding upstream 114015 8733501 ~ 8734783 (+)
G109751 NA non-coding upstream 179292 8668494 ~ 8669506 (+)
G109726 NA non-coding upstream 180891 8653476 ~ 8667907 (+)
G109981 NA non-coding downstream 32073 8882577 ~ 8938362 (+)
G110026 NA non-coding downstream 127759 8978263 ~ 8978790 (+)
G110051 NA non-coding downstream 306219 9156723 ~ 9157339 (+)
G110064 NA non-coding downstream 348436 9198940 ~ 9202420 (+)
G110079 NA non-coding downstream 468175 9318679 ~ 9374597 (+)
G109707 NA other upstream 287524 8550114 ~ 8561274 (+)
G109669 LOC108438163 other upstream 648821 8196970 ~ 8199977 (+)
igfbp2 LOC108438161 other upstream 723926 8092279 ~ 8124872 (+)
G109613 NA other upstream 987366 7860820 ~ 7861432 (+)
LOC103043571 NA other upstream 1148492 7697110 ~ 7700306 (+)
LOC103038228 pbx1,pbx1b,LOC108272157,LOC108443834,LOC104918287,LOC107677498 other downstream 665971 9516475 ~ 9630237 (+)
G110492 trak2,LOC108430857,LOC107746594,LOC108271640,LOC107582328 other downstream 2114361 10964865 ~ 10973269 (+)
G110694 LOC108444448 other downstream 3498616 12349120 ~ 12835727 (+)
G110974 lrrc8db,LOC108413222,LOC108272026,LOC107749977,LOC107698886,LOC107730703,LOC107555394,LOC107564626 other downstream 5183593 14034097 ~ 14047930 (+)
G111146 hs2st1b,LOC108427652,LOC107593177,LOC107694133,LOC107740348,LOC107679861,LOC107751310 other downstream 5906889 14757393 ~ 14761826 (+)

Expression


Co-expression Network