G109765 (fbxl3,LOC107750836,LOC106513965,LOC107549764,LOC107703114)


Basic Information

Item Value
gene id G109765
gene name fbxl3,LOC107750836,LOC106513965,LOC107549764,LOC107703114
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 8740062 ~ 8740589 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU148316
ACCTTGAAGCTGACATACTGCAGATGGTTGGAGTGTTTCTTGATAATCTGCTTGATGAGGTCTGGATGGGTTGCTTTCAGATAGGAGCTGGCCGGCTGATTGAGCTCAAACTCAAAGCACCTCCACAGCTCAGGCATGTGAAATACTTGGTTCCAGCCCTTGCACACCTGTGAAGCAAAAGCTCGGTCCAGTAAGGGAAGGTACTGGAAAATCTGCAGGAGAATCTCTTGAGGCAGACGGACCCAGTTTGCTCCGCCCACTGGATTGTAGGtctcctgctcctgcTGCTCCTCGTGCTGGTGCTCCTGCTTCTGCTCAGGTTCATCTAAGTCATCTCGACGGAGCCTCTTGCAGGATTGTGGGGAGCTGGAGCAAGAAGTGGAGCTGGAGCCAGCACCAGGACCAGGGCCTGGACCGGGACCCGGACCGGGACCGGGGCCAGGCCCGTCCTCCTgcttctctcctcttttctgTCCTCTCTTCATT
>TU148317
ACCTTGAAGCTGACATACTGCAGATGGTTGGAGTGTTTCTTGATAATCTGCTTGATGAGGTCTGGATGGGTTGCTTTCAGATAGGAGCTGGCCGGCTGATTGAGCTCAAACTCAAAGCACCTCCACAGCTCAGGCATGTGAAATACTTGGTTCCAGCCCTTGCACACCTGTGAAGCAAAAGCTCGGTCCAGTAAGGGAAGGTACTGGAAAATCTGCAGGAGAATCTCTTGAGGCAGACGGACCCAGTTTGCTCCGCCCACTGGATTGTAGGtctcctgctcctgctgctccttgtgctgcTGCTCCTGCTTCTGCTCAGGTTCATCTAAGTCATCTCGACGGAGCCTCTTGCAGGATTGTGGGGAGCTGGAGCAAGAAGTGGAGCTGGAGCCAGCACCAGGACCAGGGCCTGGACCGGGACCCGGACCGGGACCGGGGCCAGGCCCGTCCTCCTgcttctctcctcttttctgTCCTCTCTTCATT

Function

symbol description
fbxl3 Contributes to ubiquitin-protein transferase activity. Involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process and regulation of circadian rhythm. Located in nuclear body. Part of SCF ubiquitin ligase complex.

NR:

description
PREDICTED: uncharacterized protein LOC107750836

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU148316 True 486 lncRNA 0.56 2 8740062 8740589
TU148317 False 486 lncRNA 0.55 2 8740062 8740589

Neighbor

gene id symbol gene type direction distance location
LOC103044816 LOC108412428 coding upstream 36499 8699846 ~ 8703563 (+)
LOC103021389 LOC108436447,LOC103363665,LOC106926458,LOC106956952 coding upstream 129726 8604984 ~ 8610336 (+)
LOC103041643 LOC108436449,LOC107749392,LOC107678319 coding upstream 237497 8419098 ~ 8502565 (+)
LOC103042259 NA coding upstream 350878 8381120 ~ 8389184 (+)
arpc2 arpc2,LOC106575630,LOC106574678 coding upstream 368677 8353176 ~ 8371385 (+)
LOC103040732 NA coding downstream 7467 8748056 ~ 8759638 (+)
wbp4 NA coding downstream 40832 8781421 ~ 8786723 (+)
LOC103042871 LOC103042871 coding downstream 51822 8792411 ~ 8798881 (+)
ccdc122 NA coding downstream 60890 8801479 ~ 8806036 (+)
gpr180 gpr180 coding downstream 122307 8862896 ~ 8871217 (+)
G109753 NA non-coding upstream 5279 8733501 ~ 8734783 (+)
G109751 NA non-coding upstream 70556 8668494 ~ 8669506 (+)
G109726 NA non-coding upstream 72155 8653476 ~ 8667907 (+)
G109709 NA non-coding upstream 99226 8611554 ~ 8640836 (+)
G109708 NA non-coding upstream 184267 8553410 ~ 8555795 (+)
G109929 NA non-coding downstream 52644 8793233 ~ 8793371 (+)
G109971 NA non-coding downstream 108209 8848798 ~ 8850504 (+)
G109981 NA non-coding downstream 141988 8882577 ~ 8938362 (+)
G110026 NA non-coding downstream 237674 8978263 ~ 8978790 (+)
G110051 NA non-coding downstream 416134 9156723 ~ 9157339 (+)
G109707 NA other upstream 178788 8550114 ~ 8561274 (+)
G109669 LOC108438163 other upstream 540085 8196970 ~ 8199977 (+)
igfbp2 LOC108438161 other upstream 615190 8092279 ~ 8124872 (+)
G109613 NA other upstream 878630 7860820 ~ 7861432 (+)
LOC103043571 NA other upstream 1039756 7697110 ~ 7700306 (+)
LOC103038228 pbx1,pbx1b,LOC108272157,LOC108443834,LOC104918287,LOC107677498 other downstream 775886 9516475 ~ 9630237 (+)
G110492 trak2,LOC108430857,LOC107746594,LOC108271640,LOC107582328 other downstream 2224276 10964865 ~ 10973269 (+)
G110694 LOC108444448 other downstream 3608531 12349120 ~ 12835727 (+)
G110974 lrrc8db,LOC108413222,LOC108272026,LOC107749977,LOC107698886,LOC107730703,LOC107555394,LOC107564626 other downstream 5293508 14034097 ~ 14047930 (+)
G111146 hs2st1b,LOC108427652,LOC107593177,LOC107694133,LOC107740348,LOC107679861,LOC107751310 other downstream 6016804 14757393 ~ 14761826 (+)

Expression


Co-expression Network