G109661


Basic Information

Item Value
gene id G109661
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 8104297 ~ 8152380 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU148170
tatatatttatatatatattttttcagaaataggCACTACATAAACCCTGTCACATTCTGGTTGGCAGAATAAAGATCACTATACATGCTACAGATCTCCCACTACAGCGAGCGGAATCGTcctgcattaaaacattaacgttaaagagattttatttaCGATGAGTCACATTTGAACGTCTTAAAGTGCCAGAATCTTTAAGGAAAGcggcttaaagaaaaaaacaaaaataataaacacgAAGAAAAACCTTGGGTcatcttaaagtcttatttacaATCATGTGATCTGCACTGTAAAGAAGAAACTGTTGAAAGAACTCGGTATTGTTATGTTGAAATATGGCTGTGtgtatcatcagggaagaaatatAAAGTCCATTGATGGAacaataacctggtctatattcagtatattcaggtagtcagctgacctcattctttcagcacatactgttgcggaacctaaacctgcagactaGGGCTCGacgatatatatcgcaatattaaacaatgcagggcacGAGTCAGAGCCGAGTTGAACttaaaacctgaggaaaacagcaaaacaacagtaattagCCCTCtaatcagacatttaaatggctttttaaaggtaaataagagcgtttgtttttctgggattaaaagcgtgaattcagctgtaactggaaatatctgtatttcagcaaaactgtgctggcaCACAGTGCAGCTTTCCACATGTGTGTTTtcacaagcacgtgcccaaccatgtggatggaggccatgcttctcgggcagcagcagcctgtcactcacacagacacagagacagcactgtgtatctacttcttctgtcagaaatcaaaacattgcaacatgataTCTTTGATTCATTTGATTTAGGAGTGACATTGcatgtcctgcgatgtgactatttaCACATGCGCACATTGCGATGACAATGCttaagcgatatatatatatatatatatatatatatatcgtgcagccctactgcagaccaactgcagcatcatcaaccctacatcatttacttacttaaatccaggtatATTTTGAGTTCATTCAACAGCTTCTTTTTACAGTGTCTTTTTACTGATGTGAGGTGAGGTTTGGACTTATTATAATTCATCAGTCTGCCATCAGTTCTCCAGAAGCAGTAATGCACAGTGTCGTTCTTGCAGGGTGTGCAAGGTGTCGTCAGGTGAGCATAAAGTATCTAAGAGAAAATGTCCTTTAAAAAGCTGAAGCACCAAATTCTGAAAGCGATCGATCGGCCGCGTGCTGGAAGCTCAGTTCCTCCTGTTGTTCATCATACAAATGCTCTCCTGTTCTCCATCCTTCTCAATTTGaatgcaatgtgtgtgtgtgtgtgtgttttttcctttGCGATCTTCATGTAAATCAGAATTCAAATGCGTTAGAGTTTGAAAAAGGCACTGAGATTTCCATGAGAACCCGAGGACCCCCAGGAGCGGATGCTGCCGGTGGGAGAGAGAAATGGCGagatgatttttctttttttgtcccaTCCTGTATTCAAATATTCAGGTCTGCCTAATAATAATGCAGGCTGCTGGAATATTCCACTCATTTGCAtatttaaaagttaaagtttatatatatttttgtatttgtactgctctggaaaaaataagagaccacttaaaaatgattttctttgagtttctttgattctttGACCAAATTCaagaaaacctctagaatataattaagaggaagatggatgatcacaaaccatcaaaccaccaaactgaactgcttgatttttttttctttgcacca
>TU148173
tttttgggttcatactgttttttatttataaaatgaataacCAAACAAAAGCTTAATCTACTATACTACCACTTCCCTAGGgtgtttaggttttttttttattattattatttatttttattggattCAGATCAGGTGAGGTGGAGGGAAGATTATTGAACTCAATGTCAAGtcaatgaaataataaaaaaaatatatttaaacaacagTTATAAACGCACTAATTCACACATGAGACAGAAATAaccacattattttatttatttattctcatAATTGAGTACAtaactatatttaaataaatgctttttttccatTACAAAAGAGACAAAGGTAGGAGTACATATAAATTACGCAGTGAATAAATACCACACACTAATATTCTGAtgttttatgcagaaatacaaccCCAACTTTTATCACTCATGGTTACAATCTGACAGTCTGAGCTATTTTAAGGTCACATTAAAGGAAATTAACAATTCCTTGAGAGATTATTCTAAGAAACCAATCGAAAGCTTTGTGTTTGTCATGCAGACATCAAAAGGAAATATCCATTTGATATGAATTTCTATGAATTTCACACagtatatgtgtttatttggtttacaaatttagaagaaacaaaaaaaatcttgatttaATCTGAAATTAggcctaaatatatatatttatatattttttttcagaaataggCACTACATAAACCCTGTCACATTCTGGTTGGCAGAATAAAGATCACTATACATGCTACAGATCTCCCACTACAGCGAGCGGAATCGTcctgcattaaaacattaacgttaaagagattttatttaCGATGAGTCACATTTGAACGTCTTAAAGTGCCAGAATCTTTAAGGAAAGcggcttaaagaaaaaaacaaaaataataaacacgAAGAAAAACCTTGGGTcatcttaaagtcttatttacaATCATGTGATCTGCACTGTAAAGAAGAAACTGTTGAAAGAACTCGGTATTGTTATGTTGAAATATGGCTGTGtgtatcatcagggaagaaatatAAAGTCCATTGATGGAacaataacctggtctatattcagtatattcaggtagtcagctgacctcattctttcagcacatactgttgcggaacctaaacctgcagactaGGGCTCGacgatatatatcgcaatattaaacaatgcagggcacGAGTCAGAGCCGAGTTGAACttaaaacctgaggaaaacagcaaaacaacagtaattagCCCTCtaatcagacatttaaatggctttttaaaggtaaataagagcgtttgtttttctgggattaaaagcgtgaattcagctgtaactggaaatatctgtatttcagcaaaactgtgctggcaCACAGTGCAGCTTTCCACATGTGTGTTTtcacaagcacgtgcccaaccatgtggatggaggccatgcttctcgggcagcagcagcctgtcactcacacagacacagagacagcactgtgtatctacttcttctgtcagaaatcaaaacattgcaacatgataTCTTTGATTCATTTGATTTAGGAGTGACATTGcatgtcctgcgatgtgactatttaCACATGCGCACATTGCGATGACAATGCttaagcgatatatatatatatatatatatatatatatcgtgcagccctactgcagaccaactgcagcatcatcaaccctacatcatttacttacttaaatccaggtatATTTTGAGTTCATTCAACAGCTTCTTTTTACAGTGTCTTTTTACTGATGTGAGGTGAGGTTTGGACTTATTATAATTCATCAGTCTGCCATCAGTTCTCCAGAAGCAGTAATGCACAGTGTCGTTCTTGCAGGGTGTGCAAGGTGTCGTCAGGTGAGCATAAAGTATCTAAGAGAAAATGTCCTTTAAAAAGCTGAAGCACCAAATTCTGAAAGCGATCGATCGGCCGCGTGCTGGAAGCTCAGTTCCTCCTGTTGTTCATCATACAAATGCTCTCCTGTTCTCCATCCTTCTCAATTTGaatgcaatgtgtgtgtgtgtttttttgtttttttctt
>TU148174
tttattctcatAATTGAGTACAtaactatatttaaataaatgctttttttccatTACAAAAGAGACAAAGGTAGGAGTACATATAAATTACGCAGTGAATAAATACCACACACTAATATTCTGAtgttttatgcagaaatacaaccCCAACTTTTATCACTCATGGTTACAATCTGACAGTCTGAGCTATTTTAAGGTCACATTAAAGGAAATTAACAATTCCTTGAGAGATTATTCTAAGAAACCAATCGAAAGCTTTGTGTTTGTCATGCAGACATCAAAAGGAAATATCCATTTGATATGAATTTCTATGAATTTCACACagtatatgtgtttatttggtttacaaatttagaagaaacaaaaaaaatcttgatttaATCTGAAATTAggcctaaatatatatatttatatattttttttcagaaataggCACTACATAAACCCTGTCACATTCTGGTTGGCAGAATAAAGATCACTATACATGCTACAGATCTCCCACTACAGCGAGCGGAATCGTcctgcattaaaacattaacgttaaagagattttatttaCGATGAGTCACATTTGAACGTCTTAAAGTGCCAGAATCTTTAAGGAAAGcggcttaaagaaaaaaacaaaaataataaacacgAAGAAAAACCTTGGGTcatcttaaagtcttatttacaATCATGTGATCTGCACTGTAAAGAAGAAACTGTTGAAAGAACTCGGTATTGTTATGTTGAAATATGGCTGTGtgtatcatcagggaagaaatatAAAGTCCATTGATGGAacaataacctggtctatattcagtatattcaggtagtcagctgacctcattctttcagcacatactgttgcggaacctaaacctgcagactaGGGCTCGacgatatatatcgcaatattaaacaatgcagggcacGAGTCAGAGCCGAGTTGAACttaaaacctgaggaaaacagcaaaacaacagtaattagCCCTCtaatcagacatttaaatggctttttaaaggtaaataagagcgtttgtttttctgggattaaaagcgtgaattcagctgtaactggaaatatctgtatttcagcaaaactgtgctggcaCACAGTGCAGCTTTCCACATGTGTGTTTtcacaagcacgtgcccaaccatgtggatggaggccatgcttctcgggcagcagcagcctgtcactcacacagacacagagacagcactgtgtatctacttcttctgtcagaaatcaaaacattgcaacatgataTCTTTGATTCATTTGATTTAGGAGTGACATTGcatgtcctgcgatgtgactatttaCACATGCGCACATTGCGATGACAATGCttaagcgatatatatatatatatatatatatatatatcgtgcagccctactgcagaccaactgcagcatcatcaaccctacatcatttacttacttaaatccaggtatATTTTGAGTTCATTCAACAGCTTCTTTTTACAGTGTCTTTTTACTGATGTGAGGTGAGGTTTGGACTTATTATAATTCATCAGTCTGCCATCAGTTCTCCAGAAGCAGTAATGCACAGTGTCGTTCTTGCAGGGTGTGCAAGGTGTCGTCAGGTGAGCATAAAGTATCTAAGAGAAAATGTCCTTTAAAAAGCTGAAGCACCAAATTCTGAAAGCGATCGATCGGCCGCGTGCTGGAAGCTCAGTTCCTCCTGTTGTTCATCATACAAATGCTCTCCTGTTCTCCATCCTTCTCAATTTGaatgcaatgtgtgtgtgtgtgtgtgttttttcctttGCGATCTTCATGTAAATCAGAATTCAAATGCGTTAGAGTTTGAAAAAGGCACTGAGATTTCCATGAGAACCCGAGGACCCCCAGGAGCGGATGCTGCCGGTGGGAGAGAGAAATGGCGagatgatttttctttttttgtcccaTCCTGTATTCAAATATTCAGGTCTGCCTAATAATAATGCAGGCTGCTGGAATATTCCACTCATTTGCAtatttaaaagttaaagtttatatatatttttgtatttgtactgctctggaaaaaataagagaccacttaaaaatgattttctttgagtttctttgattctttGACCAAATTCaagaaaacctctagaatataattaagaggaagatggatgatcacaaaccatcaaaccaccaaactgaactgcttgatttttttttctttgcaccaggagtaaagcagcataaagttatccaaaagcagtgtgtaagactggtggaggagaaagaacatgatgccaagatgcatgaaaacaaaactgtgattaaaaaccaaccaggattattccaccaaatattgatttctaaacttttaaaacttaattttgaacaggaacttgttttctttacattactcTCTTTTTTGTTACTACAGCCATTTctcacatttctcattttctgcaaataaatgctctaaaatgacaatattttgttttaaaatttgggagaaatgttgtctgtagtttatagaataaaacaacaatgttcattttactcaaacataaacctataaatagcaaaataagagaaactgattcagaaactgaagtgatctcttcattttatccagcgctgtatattatatatattaaatatatatgtgaagAGATTGTGCTAGCCTTAACTGAGATGATAAGTTCTTCACCATCGGCTAGATACTGTAATGAATCTGTGCTATGCTCTGAATCTGATTTAATCTGATGCTAATATGCTACAATGCTAATATGCTAAGATGCTAATATGCTCACTTCCTGTGATCAGCTACGGCTGACGGTCGCTATAGGGAAGAAAACGAGTAAGCTGACTTACATCACCAGCACTGACAGTCATTTACATTGCACATTGAgttatgaaaaaaacaaatatgtcgtacaaaaacaaaaaaatctcgCAGCTAAGAAGCTGTTCACACCTTGCGTCAACCATGTTCAGTTTCTGGAGTTCAGATCACGTACGAACTTTTCTGGAGTTCGCCAGATGAGTGTAACGTGTTTTGTACAAGGGTCACTCTTTACCAGAGAATTAGTTTAATGTCTGTCAttgtataaaaagaaataatgacAGGGAAGTGTTTTTAACAATTGTGGAACCCTTCTTCCTCTATAGAACTTATAACTGGTTCTTGGATTGTTCATGGTTCTTCAAAGAGCCAttgattttgaagattttaagtgatagaccaacaaaaATTGTGCACGgttttcacaattttaatcaaataaaaatctttaaataaaa

Function

GO: NA

KEGG:

id description
ko04978 Mineral absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU148170 False 1812 lncRNA 0.38 2 8104297 8117582
TU148173 False 2057 lncRNA 0.35 2 8115109 8152380
TU148174 True 3278 lncRNA 0.35 2 8115372 8120215

Neighbor

gene id symbol gene type direction distance location
inha inha,LOC107586362 coding upstream 79724 8021047 ~ 8024573 (+)
obsl1 NA coding upstream 158158 7910585 ~ 7946139 (+)
slc19a1 slc19a1 coding upstream 250234 7843175 ~ 7854063 (+)
LOC103042636 rbm46 coding upstream 319203 7779301 ~ 7785094 (+)
LOC103044198 ccdc80,LOC108437683,LOC107565956 coding upstream 427210 7668378 ~ 7677087 (+)
arpc2 arpc2,LOC106575630,LOC106574678 coding downstream 200796 8353176 ~ 8371385 (+)
LOC103042259 NA coding downstream 228740 8381120 ~ 8389184 (+)
LOC103041643 LOC108436449,LOC107749392,LOC107678319 coding downstream 266718 8419098 ~ 8502565 (+)
LOC103021389 LOC108436447,LOC103363665,LOC106926458,LOC106956952 coding downstream 452604 8604984 ~ 8610336 (+)
LOC103044816 LOC108412428 coding downstream 547466 8699846 ~ 8703563 (+)
G109642 NA non-coding upstream 8479 8008587 ~ 8095818 (+)
G109651 NA non-coding upstream 54911 8048492 ~ 8049386 (+)
G109650 NA non-coding upstream 56256 8046942 ~ 8048041 (+)
G109645 NA non-coding upstream 76503 8021832 ~ 8027794 (+)
G109628 NA non-coding upstream 152036 7948961 ~ 7952261 (+)
G109666 NA non-coding downstream 32270 8184650 ~ 8188574 (+)
G109691 NA non-coding downstream 247387 8399767 ~ 8477373 (+)
G109708 NA non-coding downstream 401030 8553410 ~ 8555795 (+)
G109709 NA non-coding downstream 459174 8611554 ~ 8640836 (+)
G109726 NA non-coding downstream 501096 8653476 ~ 8667907 (+)
G109613 NA other upstream 242865 7860820 ~ 7861432 (+)
LOC103043571 NA other upstream 403991 7697110 ~ 7700306 (+)
gbx2 gbx2,LOC107596335,LOC103389863 other upstream 655307 7441969 ~ 7448990 (+)
G109527 NA other upstream 834705 7267871 ~ 7269592 (+)
blcap blcap,bc10 other upstream 1118805 6944765 ~ 6985492 (+)
G109669 LOC108438163 other downstream 44590 8196970 ~ 8199977 (+)
G109707 NA other downstream 397734 8550114 ~ 8561274 (+)
LOC103038228 pbx1,pbx1b,LOC108272157,LOC108443834,LOC104918287,LOC107677498 other downstream 1364095 9516475 ~ 9630237 (+)
G110492 trak2,LOC108430857,LOC107746594,LOC108271640,LOC107582328 other downstream 2812485 10964865 ~ 10973269 (+)
G110694 LOC108444448 other downstream 4196740 12349120 ~ 12835727 (+)

Expression


Co-expression Network