G109650


Basic Information

Item Value
gene id G109650
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 8046942 ~ 8048041 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU148139
acattaataaatatgatGCAGTGCAGTTTAACAATTCTTTCTTAAGACATATTAAATAGTATAcacatgattttattgaacTTTTGACAGAcacaaaattaattttagaCCTAATTTAAGACCTCAAAAATGATCAGTCATCGAAAATATCACAGTTCTGAATATGGTAAcatttatatagcgcctttctagaaactcaAGGATGATTTACAATCATgttttacactcagcactcatccacacacaagTGAAAAGAAgtagccaatagcgcacagcgtactctcaaccggaaaccaccgcaCACCTGGAGGAACGCATGGAGCACTGAGGAACTGACCCATCATAGAGTGTTAATccatgtctttaaatatttggATACATGTGGGTGTagctcattattattatttttttggggggggggtaatttagatgtagatgtagaggTTTTTGGACGGTGGGAGGGAACCTGCGCAGAATCGAGAAAAACGTGAAACGTGAAAaatccacccagatagggacttgaaccgaAGACCCCAGCACTGGAAGGTGAACGTGCTTAACCACTAATCCACTACTGTACCCACGTCTCTGGACGGAAGGAAAATGCTATGCTTTGAAAAATATTTGGATACATGAGGGCGGAGCTTCGTCTAATTTTACGTTGATGATTGGCTCCCTTACACTTCCAAATGTCAAATTTCTAACGCAATACTGTATCAAACCATGTATTAAACATTTATCTacaacatcacaaaaaaaacaaaaaactcacgaaaacaaacaaaaaaaaaaacttgaggtGATTTGTGCATCttgttatgttgtgtttaacttcatctcaacatctcaacatcCTCAGAAACAATTCTCAAGTAAATCTACAACAATCAGCCTGTGCAGAACACacttcaatcctgaaatatctCCACCCTGAGAGTTTAAAGCTGCGTTCCATATGTTAAACTCAGatatatatatacacagtacagtacaggccaaaattttggacacaccttctctttttcagtgcgttttctttattttcatgattatttacattgtagattctcac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU148139 True 1072 lncRNA 0.37 2 8046942 8048041

Neighbor

gene id symbol gene type direction distance location
inha inha,LOC107586362 coding upstream 22369 8021047 ~ 8024573 (+)
obsl1 NA coding upstream 100803 7910585 ~ 7946139 (+)
slc19a1 slc19a1 coding upstream 192879 7843175 ~ 7854063 (+)
LOC103042636 rbm46 coding upstream 261848 7779301 ~ 7785094 (+)
LOC103044198 ccdc80,LOC108437683,LOC107565956 coding upstream 369855 7668378 ~ 7677087 (+)
arpc2 arpc2,LOC106575630,LOC106574678 coding downstream 305135 8353176 ~ 8371385 (+)
LOC103042259 NA coding downstream 333079 8381120 ~ 8389184 (+)
LOC103041643 LOC108436449,LOC107749392,LOC107678319 coding downstream 371057 8419098 ~ 8502565 (+)
LOC103021389 LOC108436447,LOC103363665,LOC106926458,LOC106956952 coding downstream 556943 8604984 ~ 8610336 (+)
LOC103044816 LOC108412428 coding downstream 651805 8699846 ~ 8703563 (+)
G109645 NA non-coding upstream 19148 8021832 ~ 8027794 (+)
G109628 NA non-coding upstream 94681 7948961 ~ 7952261 (+)
G109627 NA non-coding upstream 98746 7947555 ~ 7948196 (+)
G109595 nomo,LOC108438153,LOC107677623,LOC107733372,LOC107688882,LOC107562229 non-coding upstream 276583 7769378 ~ 7770359 (+)
G109564 NA non-coding upstream 283182 7679881 ~ 7763760 (+)
G109651 NA non-coding downstream 451 8048492 ~ 8049386 (+)
G109661 NA non-coding downstream 56256 8104297 ~ 8152380 (+)
G109666 NA non-coding downstream 136609 8184650 ~ 8188574 (+)
G109691 NA non-coding downstream 351726 8399767 ~ 8477373 (+)
G109708 NA non-coding downstream 505369 8553410 ~ 8555795 (+)
G109613 NA other upstream 185510 7860820 ~ 7861432 (+)
LOC103043571 NA other upstream 346636 7697110 ~ 7700306 (+)
gbx2 gbx2,LOC107596335,LOC103389863 other upstream 597952 7441969 ~ 7448990 (+)
G109527 NA other upstream 777350 7267871 ~ 7269592 (+)
blcap blcap,bc10 other upstream 1061450 6944765 ~ 6985492 (+)
igfbp2 LOC108438161 other downstream 44238 8092279 ~ 8124872 (+)
G109669 LOC108438163 other downstream 148929 8196970 ~ 8199977 (+)
G109707 NA other downstream 502073 8550114 ~ 8561274 (+)
LOC103038228 pbx1,pbx1b,LOC108272157,LOC108443834,LOC104918287,LOC107677498 other downstream 1468434 9516475 ~ 9630237 (+)
G110492 trak2,LOC108430857,LOC107746594,LOC108271640,LOC107582328 other downstream 2916824 10964865 ~ 10973269 (+)

Expression


Co-expression Network