LOC103027549


Basic Information

Item Value
gene id LOC103027549
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 6327372 ~ 6332568 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007258495.3
cCAGCAGTTCCGTTCAGAACGCGCGCAGCAGTTCTAATGTACCCGCAGCGGTTAGAATGGAAAAgctgcagaatttaaggtggactggagAGTTCGATTAAGAAGCTGGCGGACAAGAAGCCAACTTCACCCTCGGCTTTTGTCGCGTGGATTCAACCTCCTAAAAAACATTAATCACCGCGATAAAAACATCATTTAGCGATCTTTATGTCTTCACTGAAATTAAAGCTCAACCGAAACCGATTAGGAGTTGATCTGTACGAAGCTCCGATGAGGCCGCGGAAGCCGAACTGGTCGACGGAGCAGaagctgctgctggtgcagcTGGTGAAGGCCCGGCGGATGGACCTGCTGACCGGCCGGCACTCCTGCCGCGAGATCGCCACCAACCGGCGGTGGGCGTGGGACGAGATCGCCGAGGAGATCTCCACCGCCCACCCGGACGTCCCGCGCACCGGGAAAGAGTGCGAGAGGCACTGGTTCGTGGAGCTCGCTAAAGCTAAAGAGGCTATGCTAACCCATCCGTCACCCACAGATCACGTCAGCCCGGTTACCAAGGTCGTGCTGGATATTCTCAAAATACAGAGAAAGGAGGCGGAGCTTAAAGACAGatTAGAGGAGGAGAGCAGCGTGATCTTCGAGGAGGATCAGGTGGAGGTGAAGTACATCCCCTCTCCGGTTCCTCCAATCATGAACATCGAGCTTCCTGTCAATCATATAAACCACGATATCGTCAGACACGAGATTCCTCCTGTGAGTCCTCCtcgctccccctccccctccccctccccctccgcCTCCGCCTCCGGCGAGAAGACGGATCTGGAGATGGCGGTTCTGCGGCGTCAGGAACGGGTTCTCCAGCTACAGGAGGAATATTACTCCCTCAAAATCAAACACCTGAAAGCCCGGATGCTGATGGATCTTTGATGTGAGAGAAGATCCGCGCGGAAACTGACTCTTATTGCCTTAATAAACACTAGAACTCCGGTTTAGAACCTTTAGAACCTTCAGGACTGAAACTGCTGAACCAAAAGACGCCGAGCAGAACCTCCGCTTCCTCCTGAACCTTCAGCCCGAGGACCCGTGGTGAACTCCAGTGTTCAGAGTGTGATATGACACCTTTTCACCAGTAGATGGCAAGGTGGAACTTTATACTCTCAGTAGTGACTCTGTTTGAAGATTAGAGGAGAAATCTGATCAGAGGTGGTTTCAGGTGATCAGACCAGATTTCTCTgattaaatagaaataaaagtagcatTTCTGAAGTTAAAACTAGCTCCAGATGTAGATTTATCTCATTAAAACGTTCAGATTCAAAGCTTTAGCTGGGAGGAACGATACGCTGGTGAGTGAAAACATCTTAAATTTAGtgtaaatatcaatatcaatttctttttataattatttaacttatttctACTAGTTTTAAACGTTTGTATTCAGTGAAATTTatcttattctgttttttttcagcatttgtaGCAGCATTGTGTCTTAAACAAGTCAAGAGACttttatagaatagaataagatAATTAATGTAGATATGAGTAGAAATAGGTCATTTAATAACTAGAAATAAGTAAAAGTATCTTCATGttattttatgatatatatGTTGAACATATTGACTGGATTTAATATGATTTCTCACCAAATGAACTCACAGCCCAGTTTTCAGTTCAGCCAATCAGCCATAATATTATAACCACCTGCTGAGTGTTGTTTAGGTTGTTTAAGATCTGTAAGTGATATAAAGTCCAAAAGGATCAAACGCCTCCATCCGGTCGGTACTGagcagtgcattctgggaaaacTCCACAGGACCTGTCTGATgttctggagatgttctgacctcGTCTGCTTTCCATTACATGTTTGTTTCTTGTTAAATTTACGGACTGTCCACTTCCTGCCTGATGCTGCAGATCCAGTATCATATCAGATCAtcaggacttttattatgacagTATTGTTCTGATTATATTTGATCGACTGTTTAAACAGGTTGTTTCAGCCCTGCTGATTCTTCAGTGCATgttcacagtgtttaaaaatgaaatgaaatgatttaAATGAATGAACATGACGAATAAACAACATTAGCAgtcagaagtttggacacatttgcTTAAGTATcaggtttttataataaatgcttGACAAATATAAACAGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007258495.3 True 2182 mRNA 0.44 4 6327372 6332568

Neighbor

gene id symbol gene type direction distance location
LOC103028186 LOC108433703 coding upstream 119761 6204164 ~ 6207611 (+)
ergic3 ergic3,ergi3,LOC107685813 coding upstream 132731 6181466 ~ 6194641 (+)
eif2s2 eif2s2,LOC107666094,LOC107729764,LOC107685810,LOC107554185,LOC107708139,LOC107596782 coding upstream 168450 6146052 ~ 6158922 (+)
LOC111193656 NA coding upstream 204470 6120230 ~ 6122902 (+)
LOC103030993 LOC103030993,LOC108443437,LOC107566315 coding upstream 297369 6029050 ~ 6030003 (+)
LOC103034740 LOC108442925 coding downstream 17833 6350401 ~ 6607304 (+)
LOC103026961 NA coding downstream 349612 6682180 ~ 6699512 (+)
LOC111193719 NA coding downstream 355572 6688140 ~ 6690475 (+)
tomm34 tomm34,LOC103026659 coding downstream 400715 6733283 ~ 6741325 (+)
psmf1 psmf1,LOC107580402 coding downstream 589982 6922550 ~ 6928741 (+)
G109261 NA non-coding upstream 7274 6318707 ~ 6320098 (+)
G109249 NA non-coding upstream 78356 6248588 ~ 6249016 (+)
G109240 NA non-coding upstream 163127 6164024 ~ 6164245 (+)
G109239 NA non-coding upstream 163510 6163663 ~ 6163862 (+)
G109230 NA non-coding upstream 193620 6132799 ~ 6133752 (+)
G109269 NA non-coding downstream 88679 6421247 ~ 6479365 (+)
G109278 NA non-coding downstream 262589 6595157 ~ 6598488 (+)
G109318 NA non-coding downstream 282879 6615447 ~ 6616863 (+)
G109341 ywhaba,LOC107584065,LOC108412308,LOC107708121,LOC107595428 non-coding downstream 411893 6744461 ~ 6756941 (+)
G109381 NA non-coding downstream 701822 7034390 ~ 7052796 (+)
G109248 LOC108433704 other upstream 72315 6253210 ~ 6255057 (+)
G109242 NA other upstream 160710 6164599 ~ 6166662 (+)
G108999 LOC108411783,LOC107584812,LOC107555440,LOC107709735,LOC107705592 other upstream 1017615 5306050 ~ 5309757 (+)
LOC103029387 LOC103029387 other upstream 1265253 5056538 ~ 5062119 (+)
wdsub1 wdsub1,LOC108411000,LOC105893302 other upstream 1499654 4805229 ~ 4827718 (+)
rims4 rims4,LOC107666126,LOC107696477,LOC107708122 other downstream 398576 6731144 ~ 6866913 (+)
blcap blcap,bc10 other downstream 612197 6944765 ~ 6985492 (+)
G109527 NA other downstream 935303 7267871 ~ 7269592 (+)
gbx2 gbx2,LOC107596335,LOC103389863 other downstream 1109401 7441969 ~ 7448990 (+)
LOC103043571 NA other downstream 1364542 7697110 ~ 7700306 (+)

Expression


Co-expression Network