G109249


Basic Information

Item Value
gene id G109249
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 6248588 ~ 6249016 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU147550
TATTTTCCAAACCCACATTTCAGTTTAAGGCATCGactaaacagacagagagaaacagcaacaACATCACGAGCTCCTCTCTCCCAAACACCAGAGATAAACCGCAGAGCTTCTGAACCGCGAGCGCAGCGACACTCCAGCTCCGACTGCAGAGACTAAACTGCTCAGCACCAGTTCTGATTCCTGCTAAAGTCTATATAAAGAGTCTTAAACCGTTATTAACGTTTTTCCACCAATATGAAGAGAATTTGACCAGCAAAGACCCAATCGGTTCTTCTGAGTGGTGATGTTTCTACAGATGCAACTGAAATAACTCAATAAATCACTGCAATTTTAGTTCATTAGCAAAATATACACATTCTCAGCAGTTTgcaattaactaattaaataagaGGATATTTAAACAGCTCAAAAGtactaataaaacaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU147550 True 429 lncRNA 0.39 1 6248588 6249016

Neighbor

gene id symbol gene type direction distance location
LOC103028186 LOC108433703 coding upstream 40977 6204164 ~ 6207611 (+)
ergic3 ergic3,ergi3,LOC107685813 coding upstream 53947 6181466 ~ 6194641 (+)
eif2s2 eif2s2,LOC107666094,LOC107729764,LOC107685810,LOC107554185,LOC107708139,LOC107596782 coding upstream 89666 6146052 ~ 6158922 (+)
LOC111193656 NA coding upstream 125686 6120230 ~ 6122902 (+)
LOC103030993 LOC103030993,LOC108443437,LOC107566315 coding upstream 218585 6029050 ~ 6030003 (+)
LOC103027549 NA coding downstream 78356 6327372 ~ 6332568 (+)
LOC103034740 LOC108442925 coding downstream 101385 6350401 ~ 6607304 (+)
LOC103026961 NA coding downstream 433164 6682180 ~ 6699512 (+)
LOC111193719 NA coding downstream 439124 6688140 ~ 6690475 (+)
tomm34 tomm34,LOC103026659 coding downstream 484267 6733283 ~ 6741325 (+)
G109240 NA non-coding upstream 84343 6164024 ~ 6164245 (+)
G109239 NA non-coding upstream 84726 6163663 ~ 6163862 (+)
G109230 NA non-coding upstream 114836 6132799 ~ 6133752 (+)
G109118 NA non-coding upstream 143581 6104165 ~ 6105007 (+)
G109109 NA non-coding upstream 187224 6060939 ~ 6061364 (+)
G109261 NA non-coding downstream 69691 6318707 ~ 6320098 (+)
G109269 NA non-coding downstream 172231 6421247 ~ 6479365 (+)
G109278 NA non-coding downstream 346141 6595157 ~ 6598488 (+)
G109318 NA non-coding downstream 366431 6615447 ~ 6616863 (+)
G109341 ywhaba,LOC107584065,LOC108412308,LOC107708121,LOC107595428 non-coding downstream 495445 6744461 ~ 6756941 (+)
G109242 NA other upstream 81926 6164599 ~ 6166662 (+)
G108999 LOC108411783,LOC107584812,LOC107555440,LOC107709735,LOC107705592 other upstream 938831 5306050 ~ 5309757 (+)
LOC103029387 LOC103029387 other upstream 1186469 5056538 ~ 5062119 (+)
wdsub1 wdsub1,LOC108411000,LOC105893302 other upstream 1420870 4805229 ~ 4827718 (+)
G108773 march7 other upstream 1656795 4586327 ~ 4591793 (+)
G109248 LOC108433704 other downstream 4194 6253210 ~ 6255057 (+)
rims4 rims4,LOC107666126,LOC107696477,LOC107708122 other downstream 482128 6731144 ~ 6866913 (+)
blcap blcap,bc10 other downstream 695749 6944765 ~ 6985492 (+)
G109527 NA other downstream 1018855 7267871 ~ 7269592 (+)
gbx2 gbx2,LOC107596335,LOC103389863 other downstream 1192953 7441969 ~ 7448990 (+)

Expression


Co-expression Network