psmf1 (psmf1,LOC107580402)


Basic Information

Item Value
gene id psmf1
gene name psmf1,LOC107580402
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 6922550 ~ 6928741 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007258487.2
AGTCTGGCGGCTGCGTGTTCACTCCGGACCGGTTAAGCGGGGAGGCGGTGTGATGCAGCAGATGTAAACAGATCAGGGCTGTTTTGGTTTCGGTTCTGGAGGTTCTGCAGGTTTTTGCTGGGTCATGGCGGGGCTGGAGGTTCTGTACAGCGGGGTTTTGGGCTCTGTTAGCTGCGCTCAGGACGCGGCGGTGTGTTTTGTTCACTGGGAGATTATTAAAAGCGGGTTTAAGTGTTTAGGGACTGGAGATCAGCCTCGAGATGGAGAGAAGAAATCCGAGTTGCTTCCTGCAGCCTGGAACGCCAGCAAAGAGCTGTACACCCTGCGCTACAGATCCAGCGATGATAAATCTAACCTGCTCCTGAAGGCCATCACTGTGGATTCCACCCTGATCTTCAACTTCATGGACTCCGCTACAGACAGAGTAACAGACCTGACCATCACTGTTTCTGATTATGTAGATGAGAACAGTCTGCAGACGTTTGACAGTGTGTTTAAGAACACAGAAGATCTGGTGAAGAAGCTGAAGTCCTCACTGCTGCCtgcagcaaaaacagagaagaaagagaagagagaaagacctCCAGCTACAGACACCCGACCCAATCCCGACCACGACCCTCTCCGCATCCCCTCCAGAGTTCCCCCCACCGCTCGCCCCCCAAACTGgaCAGACCCGATGGCTCCGTTCGCTGCAGGAGGAGCAGACCTCGATCCATTCGGTGGGAGAGCAGGAGGGATGATCGTGGATCCGTTAAGAGCCGGATTCCCTCGTTCTGGATTTGATCCGACAGGAGGAATACCCGGAGTCCTCCCACCCGGCGCCGTGCCCCCCGGTGCCCGCTTCGACCCGTTCGGACCCGTCGGGAGACACAGACCCGGGCCAGACCCGGATCATCTGCCTCCCCCCGGATACGACGACATGTTCATGTAGAAGATCCTGAGGTTCTGCTGGAGGTTCTGCTGGAGGTTCTGTGTGTGATGAACTGATGatggtgtttctgtgtgtttggaTGGCAGAGTGAAGCCGTGTTTTATATTCCAGACTAAGGTTCTTGCTTTGAGAGAAGATTAATGACTGTAATTAATGATTGCAGGTTTTCGACGCTGATTTATCCCCTAATTTAGGATTCGCTGGTTTGATCCTGTTGCTATTGACTCGTTCCTGATGGGCACAATAAACTACTTTTTTTgttgaataaacaaataaataaataacagaa

Function

symbol description
psmf1 Predicted to be involved in ubiquitin-dependent protein catabolic process. Predicted to be located in endoplasmic reticulum. Orthologous to human PSMF1 (proteasome inhibitor subunit 1).

NR:

description
proteasome inhibitor PI31 subunit

GO:

id name namespace
GO:0000502 proteasome complex cellular_component

KEGG:

id description
K06700 PSMF1; proteasome inhibitor subunit 1 (PI31)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007258487.2 True 1223 mRNA 0.52 7 6922550 6928741

Neighbor

gene id symbol gene type direction distance location
tomm34 tomm34,LOC103026659 coding upstream 181225 6733283 ~ 6741325 (+)
LOC103026961 NA coding upstream 223038 6682180 ~ 6699512 (+)
LOC111193719 NA coding upstream 232075 6688140 ~ 6690475 (+)
LOC103034740 LOC108442925 coding upstream 315246 6350401 ~ 6607304 (+)
LOC103027549 NA coding upstream 589982 6327372 ~ 6332568 (+)
LOC103032809 LOC108439719 coding downstream 67029 6995770 ~ 7041534 (+)
LOC103023115 NA coding downstream 141954 7070695 ~ 7072091 (+)
LOC103032506 LOC103032506,LOC108437696 coding downstream 169773 7098514 ~ 7100475 (+)
LOC111193722 LOC108273346 coding downstream 173655 7102396 ~ 7106549 (+)
LOC103022304 LOC103022304,LOC108437673,LOC107738308,LOC107559924,LOC107748531,LOC107596314,LOC107688831 coding downstream 208037 7136778 ~ 7155237 (+)
G109341 ywhaba,LOC107584065,LOC108412308,LOC107708121,LOC107595428 non-coding upstream 165609 6744461 ~ 6756941 (+)
G109318 NA non-coding upstream 305687 6615447 ~ 6616863 (+)
G109278 NA non-coding upstream 324062 6595157 ~ 6598488 (+)
G109269 NA non-coding upstream 443185 6421247 ~ 6479365 (+)
G109261 NA non-coding upstream 602452 6318707 ~ 6320098 (+)
G109381 NA non-coding downstream 105649 7034390 ~ 7052796 (+)
G109378 NA non-coding downstream 113689 7042430 ~ 7045381 (+)
G109379 NA non-coding downstream 117178 7045919 ~ 7049644 (+)
G109385 NA non-coding downstream 124956 7053697 ~ 7054999 (+)
G109386 rbl1 non-coding downstream 128884 7057625 ~ 7057858 (+)
rims4 rims4,LOC107666126,LOC107696477,LOC107708122 other upstream 55637 6731144 ~ 6866913 (+)
G109248 LOC108433704 other upstream 667493 6253210 ~ 6255057 (+)
G109242 NA other upstream 755888 6164599 ~ 6166662 (+)
G108999 LOC108411783,LOC107584812,LOC107555440,LOC107709735,LOC107705592 other upstream 1612793 5306050 ~ 5309757 (+)
LOC103029387 LOC103029387 other upstream 1860431 5056538 ~ 5062119 (+)
blcap blcap,bc10 other downstream 16024 6944765 ~ 6985492 (+)
G109527 NA other downstream 339130 7267871 ~ 7269592 (+)
gbx2 gbx2,LOC107596335,LOC103389863 other downstream 513228 7441969 ~ 7448990 (+)
LOC103043571 NA other downstream 768369 7697110 ~ 7700306 (+)
G109613 NA other downstream 932079 7860820 ~ 7861432 (+)

Expression


Co-expression Network