G109393


Basic Information

Item Value
gene id G109393
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 7073748 ~ 7075890 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU147768
CACGGtacatgtacagtataaataacttttataagATTTATATAAATACTGTGAACACTTGCCAACATGCAAAATAACATGCTTCAGTTACAGAACATGATATAGTTCTAGGCCATTTTAAGCCATAAGAGGGCCGACCTATTTCTAAACATTGATTGGCTgcaaatattttaaggttaaaatcctgATCCTGTTAATCAGAGTTCATGTCTTTGCAGTTAATTTTAATAACCATAcgatctttaaaacatcagtgcagacatggaaaaaaaacaaaaatctaagaATCCATGTCAAAACCAGTTATAGCAGGCCTATATTAAAAGGTCACGTTTCactagctgaataacatttctgttatcAGTTAGAAGTTACAATTTCTCACTCATTCGAGTCATTTTTAGACCAAAACATCATACCGTGGCcttattttggtgaaaaaTGAAAAGGATgtggcttgttttaacacggtaaaaacacagactacagtccattATTGGATagtagactgtagtctgcattttTATCCTGTTAAAAACGGTGATTTTGGTGAAAAGGACgtggcttgttttaacatgctaCGTCCAATATATTgcatattggactgtagtctgcgtttctaccgtgttaaaacaatctATATCCTTTTAACCAAAATCACCAAAATAAGTAAGGCTGCATTATGACGGCCTTACAAGCGCtgtatttataagcgctgtactttagtggagtggctttaacgctccttaatacctgactgatagaattcatatataaggagcaccggattataaggagctctgattattttttggaaaattaaaggattttaggtgcacgTGTTTGTAATTCATATTCAGAAACTGTTTCAAGCAGCATGTTTTTTTCCTCTATAAACAAGCCAGCCCCGTAGTTTAAATCTGGATTTGTAATTTTGGAACCTGGAATAGTGTGTATCTGCTCACTTATGTGACTGTTCTTCATGCACTTGTGAATCTTTAGTGTCTTTGAGTGTCTGAAGCTCTtctcacactctgagcagtaatacggtttctctccggtgtgaattcGCTGGTGCTGAAGGAGATTACTCTGCTGTTTGAATCTCCTCCCACACTCCgggcactgatacggtttctctccagtgtgaatgcgcaggTGTTTTTGAAGGTGACCCAGTTGTTTAAAACTTCTGTcgcactctgagcagtgatacggcgtctctcctgtgtgaatgcgctggtgagtTTTGAAATGGCTCTGTCTCGTGAACGTTTTGTCGCAGTGTAAacagtgaaacggtttctctccggtgtgaattaGCTGGTGCGTTTTGTAGTGAAACAGTCTAGAAAAGCtcatcccacagtctgagcagtgatagggtttctctccagtgtgaattcgCTCGTGCAGACGGAGTGTACCctggtgagtaaagctcttcccacactctgagcaccgGTACGGACGCTCTCCGGTGTGAATAAGCTGGTGTCTTTTGAAATGACTCGGTCTAGcaaagctcttcccacagtctgaacagtgatacggttttaTTCCAGTGTGAATGAGCTTGTGCTGATTGAGAGTACTCTGCTGACTGaagctcctcccacagtctgagcagtgataggttttctctcctgtgtgaatgagctggtgttGATCGAGAGATCTCTGTTGAGTAAAAGtgttcccacactctgagcactgatacggtttctctccagtgtgaacgcgctggtgtctCCGTAAAGCACTCTGATTATAGAAACTCTtctcacactctgagcagtgatgagTTTTCTTGTCTGCATTTTCCTGCATTTGTTCATGAGGTGCGGGAGAGGACATTTTCCAAATATTGGAGGTTCTTTCACACTTTCAGCAGCAAAACATCTTCTTAAAATCTTCTAATTGCATGTATTTGTGAAGTTAAATCTCAACCAGAGACTTGGAACTGGTCAGCAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU147768 True 1975 lncRNA 0.41 2 7073748 7075890

Neighbor

gene id symbol gene type direction distance location
LOC103023115 NA coding upstream 1657 7070695 ~ 7072091 (+)
LOC103032809 LOC108439719 coding upstream 32214 6995770 ~ 7041534 (+)
psmf1 psmf1,LOC107580402 coding upstream 145007 6922550 ~ 6928741 (+)
tomm34 tomm34,LOC103026659 coding upstream 332423 6733283 ~ 6741325 (+)
LOC103026961 NA coding upstream 374236 6682180 ~ 6699512 (+)
LOC103032506 LOC103032506,LOC108437696 coding downstream 22624 7098514 ~ 7100475 (+)
LOC111193722 LOC108273346 coding downstream 26506 7102396 ~ 7106549 (+)
LOC103022304 LOC103022304,LOC108437673,LOC107738308,LOC107559924,LOC107748531,LOC107596314,LOC107688831 coding downstream 60888 7136778 ~ 7155237 (+)
LOC103031557 iqca1,LOC108437680,LOC107586319,LOC106590510 coding downstream 277569 7353459 ~ 7420339 (+)
LOC103044198 ccdc80,LOC108437683,LOC107565956 coding downstream 592488 7668378 ~ 7677087 (+)
G109391 NA non-coding upstream 5734 7067707 ~ 7068014 (+)
G109390 rbl1,LOC107666117,LOC107596834,LOC107723925 non-coding upstream 7107 7063793 ~ 7066641 (+)
G109389 rbl1,LOC107584070,LOC107596834 non-coding upstream 10802 7062491 ~ 7062946 (+)
G109388 NA non-coding upstream 13798 7059665 ~ 7059950 (+)
G109387 NA non-coding upstream 14237 7059255 ~ 7059511 (+)
LOC111193724 NA non-coding downstream 1669 7077559 ~ 7079391 (+)
G109399 NA non-coding downstream 13853 7089743 ~ 7091235 (+)
G109500 NA non-coding downstream 107797 7183687 ~ 7184054 (+)
G109501 NA non-coding downstream 108246 7184136 ~ 7184704 (+)
G109526 NA non-coding downstream 189240 7265130 ~ 7265376 (+)
blcap blcap,bc10 other upstream 88256 6944765 ~ 6985492 (+)
rims4 rims4,LOC107666126,LOC107696477,LOC107708122 other upstream 206835 6731144 ~ 6866913 (+)
G109248 LOC108433704 other upstream 818691 6253210 ~ 6255057 (+)
G109242 NA other upstream 907086 6164599 ~ 6166662 (+)
G108999 LOC108411783,LOC107584812,LOC107555440,LOC107709735,LOC107705592 other upstream 1763991 5306050 ~ 5309757 (+)
G109527 NA other downstream 191981 7267871 ~ 7269592 (+)
gbx2 gbx2,LOC107596335,LOC103389863 other downstream 366079 7441969 ~ 7448990 (+)
LOC103043571 NA other downstream 621220 7697110 ~ 7700306 (+)
G109613 NA other downstream 784930 7860820 ~ 7861432 (+)
igfbp2 LOC108438161 other downstream 1016389 8092279 ~ 8124872 (+)

Expression


Co-expression Network