G114359 (r3hdm2)


Basic Information

Item Value
gene id G114359
gene name r3hdm2
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 28816230 ~ 28829763 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU154577
ACCTGTGCGTGACCCCCTGGCGCTACCCTGCGAGCCCTTGCTGCCCAGGCTGTCGCCGCGTGTGAGGATAGAGATGCCACTGAAGCTGCTGGCCTTGGTGACGGGCGGCCGCAGCGTGCGGTTGGAACTGTCCGAGTCTGTGCTGCTCCACGGCCGTGGCTCCAGACTCTTCATATCGCTGTCTGTGCTGCTCTGCCGGCTGCTGGACGCTCTGCTCGAACTCTCCTTATTACCCCTGTTGTCATTGATGTATCCGTTTTGAGAGGaTTCCCGAGCAAAGATTCTATCTCGAACACGCTGAtactcctcctccctctcctcaATGGACTTACTGCGTCGACCATCCTGGAGTGGAACCCGGATCTGGTTATCGTCTTTGTCCATGCTTGCATCATCCCTCTTGAGAATGAATTTCTTTTGGAAATCCATGTTCCTTTCGTCC

Function

symbol description
r3hdm2 Predicted to enable nucleic acid binding activity.

NR:

description
PREDICTED: bromodomain-containing protein DDB_G0280777-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU154577 True 442 lncRNA 0.56 4 28816230 28829763

Neighbor

gene id symbol gene type direction distance location
LOC103021438 LOC108431803,LOC107575493 coding downstream 57083 28754098 ~ 28759147 (-)
gli1 gli1,LOC107683616 coding downstream 100044 28653001 ~ 28716186 (-)
LOC103034067 NA coding downstream 169820 28596942 ~ 28646410 (-)
mars mars coding downstream 300644 28492506 ~ 28515586 (-)
mbd6 LOC108431819,LOC107558151 coding downstream 342840 28454072 ~ 28473390 (-)
rbm19 NA coding upstream 368110 29197873 ~ 29213345 (-)
LOC103046288 LOC108427555,LOC108271798,LOC107680717,LOC107667034,LOC107555973 coding upstream 386573 29216336 ~ 29231900 (-)
LOC103044340 ptprg,LOC108427534,LOC107592848 coding upstream 462498 29292261 ~ 29457665 (-)
LOC103032473 camk1a,LOC108427562,LOC108271991,LOC107708108,LOC107680695,LOC107713533,LOC107667041 coding upstream 809355 29639118 ~ 29681400 (-)
LOC103042196 kcnb1,LOC107667042,LOC107713536,LOC107680683,LOC108272148,LOC107555957 coding upstream 901984 29731747 ~ 29794085 (-)
G114272 NA non-coding downstream 461522 28352444 ~ 28354708 (-)
G114269 NA non-coding downstream 469759 28343184 ~ 28346471 (-)
G114245 NA non-coding downstream 598808 28217201 ~ 28217422 (-)
G114228 NA non-coding downstream 644260 28171679 ~ 28171970 (-)
G114225 stmn3,LOC107566415,LOC107681270,LOC107734610 non-coding downstream 651792 28162922 ~ 28164438 (-)
G114380 NA non-coding upstream 18196 28847959 ~ 28848212 (-)
G114401 NA non-coding upstream 101587 28931350 ~ 28931596 (-)
G114407 NA non-coding upstream 147069 28976832 ~ 28977453 (-)
LOC111193759 NA non-coding upstream 299665 29129428 ~ 29141680 (-)
G114499 NA non-coding upstream 355855 29185618 ~ 29194645 (-)
G114304 NA other downstream 231271 28583393 ~ 28584959 (-)
G114270 NA other downstream 454749 28348265 ~ 28361481 (-)
G114134 kcnq2,LOC107758168,LOC107665991,LOC107558155 other downstream 686374 28125236 ~ 28129856 (-)
G113888 NA other downstream 2423033 26346140 ~ 26393197 (-)
G113826 NA other downstream 2753946 26032895 ~ 26062284 (-)
ndufa4l2 ndufa4l2,LOC107385343 other upstream 317673 29147436 ~ 29162803 (-)
LOC103044966 tardbp,LOC108427558,LOC107666995,LOC107713527,LOC107555974 other upstream 449053 29278816 ~ 29284782 (-)
G114514 NA other upstream 645083 29474846 ~ 29475567 (-)
G114628 NA other upstream 1009496 29839259 ~ 29839768 (-)
LOC111193670 NA other upstream 1130621 29960384 ~ 29964703 (-)

Expression


Co-expression Network