CI01000010_06625010_06627729


Basic Information

Item Value
gene id CI01000010_06625010_06627729
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 6624190 ~ 6627729 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000010_06625010_06627729.mRNA
GAAAAGATCTTTAAGCTTTACGAGCGGAAGCTTCATGGAGACTTTGATACAAACAGCCATATTCAAAAGAAGAAGGAGTTTCGCAATCCAAGTATTTATGAGAAGCTAATCCAGTTCTGTGGAATTGACGAACTTGGAACCAATTATCCAAAAGATATGTTTGACCCCCATGGCTGGTCAGAGGATTCGTATTATGAGGCACTGGCCAAAGCTCAGAAGGCAGAGATGGACAAGCTGGAAAAAGCCAAAAAGGAAAAGACCAAGATTGAGTTTGTGACGGGCACCAAAAAAGGCACGGCTACTAATGCAGCAGCTCTGGCCACAAACACAACAACTGCCTCATCCACAGATGCCCAGAAGAGGAAGAGCAAGTGGGACTCAGCAGTGCCAGTGTCTCTGGCACAACCCGCCCTCCTCACCACCACTGCCACTCTCCCTGGAGTCGTCTCTGTGACCACAACAGCCAGCGGCACCAAGACCACAGTCATCTCAGCAGTGGGAACCATTCTCAAAAAAGCTAAGCAATGACACGAAAAATGTGACAGGAAAAAAAAGACCGGAAATTTCACTTCTGTTTGCCAGATTGATAGTCAATGGCAGTGCCACATGTAAACTTAACAAGTCCTGCTGTTTACTTCAGCAACAGCCAGCTTCAACTGTCTGGCAGCTTGAATAGATGGTCTTTTGAGAATATTTTGGATATACAGTATCATCATAACGGCATAATTATACCAGACATTTGTGTTCAACTTTGACTAGCTATTTCAAATGCATTCATCCGATGGTTGATGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTATTTAAACTTCTTGGTTGTCTTTGCCCAGATGTTTTCCATTGAATTCATGTATGTAAAAACTATCCTGCAGCTGTCATACATTGCAAGTCACCTGAACTTTCATGTGCAACATATGAAAATGATCAAACCTACAATAATTTGAGTAATTTCTTGTTTTATTTTTGTTTTTGTTTTTTCCTTTTAGTAATCATTCATTGTTTGATAGAAGTCCAGTCAGGTTTGCCTACTATCTGTCTCCATTTTCATGTTTTGGATAGGTCACATCTTAGAATACCGATTTAAACATCACTGGAGTATTCATTCAGTATCTTATTACAACTGATCAGGGCTAATTGACTATTTCATTTATCGTATAGACCGAAGGGGGTCTTATAATTTGGTGAAAGTTCATTTTTAGTTTTTTTCCTGTCATTTCTATCTTTTTTTATTTCATTTTAGCAATGCAAGTAGGTCTTTTTTAAAACATGTATATATTAAAGTGACTCTGTGGCTTCTCTGTAGCTCAGCAGTGTAAAAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000010_06625010_06627729.mRNA True 1348 mRNA 0.39 6 6624190 6627729

Neighbor

gene id symbol gene type direction distance location
CI01000010_06588155_06615737 ITGB4 coding downstream 8453 6587220 ~ 6615737 (-)
CI01000010_06504062_06505040 NA coding downstream 118914 6503983 ~ 6505276 (-)
CI01000010_06456276_06481282 SLC5A5 coding downstream 142763 6456276 ~ 6481427 (-)
CI01000010_06253230_06263855 LONRF1L, LONRF1 coding downstream 360335 6252366 ~ 6263855 (-)
CI01000010_06180084_06216445 DOC2D coding downstream 407745 6180084 ~ 6216445 (-)
CI01000010_06639960_06641129 NA coding upstream 11851 6639580 ~ 6641139 (-)
CI01000010_06681043_06685375 NA coding upstream 53034 6680763 ~ 6685375 (-)
CI01000010_06690142_06698430 CEPT1A coding upstream 62266 6689995 ~ 6698542 (-)
CI01000010_06704532_06716191 KIF2A coding upstream 76693 6704422 ~ 6716191 (-)
CI01000010_07013266_07023918 NA coding upstream 385351 7013080 ~ 7026333 (-)
G65047 NA non-coding downstream 91534 6496859 ~ 6532656 (-)
G65049 NA non-coding downstream 113570 6507831 ~ 6510620 (-)
G65046 NA non-coding downstream 128245 6495479 ~ 6495945 (-)
G65045 NA non-coding downstream 129110 6494438 ~ 6495080 (-)
G65041 NA non-coding downstream 185108 6438865 ~ 6439082 (-)
G65082 NA non-coding upstream 19803 6647532 ~ 6648170 (-)
G64981 NA non-coding upstream 101829 6729558 ~ 6735582 (-)
G65102 NA non-coding upstream 114015 6741744 ~ 6804348 (-)
G65131 NA non-coding upstream 317450 6945179 ~ 6945596 (-)
G65132 NA non-coding upstream 319662 6947391 ~ 6949007 (-)
G64918 NA other downstream 527710 6093689 ~ 6096480 (-)
G64877 NA other downstream 707179 5916257 ~ 5917011 (-)
G64564 NA other downstream 1381264 5049155 ~ 5242926 (-)
CI01000010_04612793_04613017 SMIM15 other downstream 2010634 4612460 ~ 4613135 (-)
G64237 NA other downstream 2387774 4229950 ~ 4236416 (-)
G65453 NA other upstream 1035962 7659435 ~ 7672343 (-)
CI01000010_07880416_07900104 NA other upstream 1214907 7880375 ~ 7900104 (-)
G67099 NA other upstream 2013961 8641690 ~ 8674897 (-)
CI01000010_11929215_11933223 DYNLL6, DYNLL1, DYNLL2A, DYNLL2, DYL1, DYNLL1.S, BRAFLDRAFT_130244, DYNLL1.L other upstream 5301232 11928448 ~ 11933343 (-)
CI01000010_11965317_11969111 NA other upstream 5337136 11964865 ~ 11969710 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_035493 sap30bp coding NC_007119.7 CM002892.2 13064750 ~ 13098192 (+)
bowfin (Amia calva) AMCG00012988 sap30bp,LOC107725325 coding CM030125.1 CM030125.1 15843853 ~ 15859012 (+)