CI01000010_06704532_06716191 (KIF2A)


Basic Information

Item Value
gene id CI01000010_06704532_06716191
gene name KIF2A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 6704422 ~ 6716191 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000010_06704532_06716191.mRNA
AGCTGTTGGATTTCTTACAGGGCGAATACACCAGGCCATGGTGACGTCTTTAAATGAAGATAATGAAAGTGTTACCGTGGAATGGATAGAAAATGGAGACACCAAAGGGAAAGAGATTGATTTGGAGTGCATATTCTCACTAAATCCAGATGTTGCTCCAGAGGAGGAGATTTCCTTGAGCCCTGTTACACCGCCGCCTCCTACACCCAGCTCTGTGAAAGTTAACAAAATCCCTAAGAATCGTAGAACTATTGCACCGGGAAGGAGTGAAATCCCATCCAGAGACAACAGAGCGAGGAGGAAGTCGAACTGTGTGAAGGAAGTGGAAAAATTGCAGGAGAAGAGGGAGCGACGCAGGCTACAGCAACAGGAACTGAGAGAGAAGCGAGCACAGGAAATTGATACAACGATTCCAAACTATGAAATACTTCAGATGATCAGAGACTTTAGAGCAAGTTTGGACTATCGACCACTAACCACGACAGATTTGATTGAAGAGCACAGAATATGTGTCTGTGTGAGGAAACGACCCCTCAATAAAAAAGAGTTGACGGTAAAGGACCTAGATGTGATCACTATTCCAAGTAAAGATGTCGTCATGGTTCATGAACCAAAACAGAAGGTGGACCTGACTCGATACCTAGAGAACCAAACATTCCGCTTCGATTATGCCTTTGATGACAGCACGACAAATGAAATGGTTTACAGGTTTACTGCAAGACCTCTTGTGGAAACCATCTTTGATAGAGGAATGGCCACATGCTTTGCTTATGGCCAAACAGGAAGTGGAAAAACTCATACCATGGGTGGAGATTTTTCAGGAAAGAACCAGGATTGTTCTAAAGGAATCTATGCATTAGCTGCTCGAGATGTTTTTCTCATGCTGAAGAAACCAAACTATAAGAAGCTGGATCTTCAGGTATTTGATCTGTTGAATCGGAAGGCTAAGCTGCGTGTGCTAGAAGATGGAAAGCAGCAAGTGCAAGTGGTTGGGCTTCAGGAACGTGAGGTCAAATGCACTGAGGATGTCCTCAAACTCATTGAAATGGGGAACAGCTGCAGGACATCAGGTCAGACCTCAGCCAATGCCCACTCATCCCGTAGCCATGCCGTCTTCCAAATCATACTACGAAGGAAGGGCAAGATGCACGGCAAATTCTCACTCATTGATCTGGCGGGTAATGAACGTGGAGCGGACACGTCTAGCGCTGATCGGCAGACTCGTTTGGAGGGAGCCGAAATCAACAAGAGTCTGTTGGCTCTAAAGGAATGTATCAGAGCTCTGGGCCGTAATAAGCCTCACACCCCATTCAGAGCAAGCAAGCTCACACAGGTCCTCAGAGACTCATTTATTGGTGAGAACTCCAGGACATGCATGATCGCCACCATCTCTCCTGGTATGGCCTCCTGTGAGAACACGCTGAACACTCTGAGATATGCCAACAGAGTGAAGGAGCTGACCGTGGACCCCAATGCTGTGACAGAGGGTGTCCGCCCCAATGTCAACGCCATCAACCAGCTGGATATCATGGATGAGGATTGGGAGTTGGGCAACTCCCCTCAGAGAGATGACCTCAAACTGCTCTGTGAACAGAATGAAGAGGAAGTCTCCCCTCAGCTCTTCACGTTCCATGAGGCAGTGTCTCAGCTGGTGGAGATGGAGGAGCAGGTTTTAGAGGACCACAGGGCTGTGTTTCAGGAGTCTATCAGGTGGCTTGAGGACGAGAAGGTTCTCCTGGAGATGACTGAGGAGGTGGATTATGACGTGGACTCCTACTCCTCTCAGCTCGAGCAGATTCTTGACCAGAAGATTGACATACTTATTGAGCTCCGAGATAAAGTGAGGTCATTCCGTTCTACGCTCCAAGAGGAGGAACAAGCCAGCAAGCAGATTAACCCCAAGCGGCCCCGTGCGCTGTAGCCTGGATCACACTCACGGAGGAACGACAAATACAAGAGTCCTGTAGGCTTCTTGATAGTATTCAGAAGTATTCTGAAGAAACTCTTTCCTACTTTCACATGTGAAATAAA

Function

symbol description
kif2a Enables microtubule binding activity. Involved in mitotic spindle assembly and regulation of cell migration. Located in cytoplasm; microtubule organizing center; and nuclear lumen. Part of centriolar subdistal appendage. Colocalizes with spindle microtubule and spindle pole. Implicated in complex cortical dysplasia with other brain malformations 3.

GO:

id name namespace
GO:0030154 cell differentiation biological_process

KEGG:

id description
K10393 KIF2_24, MCAK; kinesin family member 2/24

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000010_06704532_06716191.mRNA True 2031 mRNA 0.47 18 6704422 6716191

Neighbor

gene id symbol gene type direction distance location
CI01000010_06690142_06698430 CEPT1A coding downstream 5880 6689995 ~ 6698542 (-)
CI01000010_06681043_06685375 NA coding downstream 19047 6680763 ~ 6685375 (-)
CI01000010_06639960_06641129 NA coding downstream 63283 6639580 ~ 6641139 (-)
CI01000010_06625010_06627729 NA coding downstream 76693 6624190 ~ 6627729 (-)
CI01000010_06588155_06615737 ITGB4 coding downstream 88685 6587220 ~ 6615737 (-)
CI01000010_07013266_07023918 NA coding upstream 296889 7013080 ~ 7026333 (-)
CI01000010_07051047_07053923 NA coding upstream 334602 7050793 ~ 7053991 (-)
CI01000010_07128701_07132022 ENDOG coding upstream 412471 7128662 ~ 7132068 (-)
CI01000010_07135276_07196633 NTNG2A, NTNG2 coding upstream 418200 7134391 ~ 7200800 (-)
CI01000010_07320443_07334877 ATP2A2.S, ATP2A2B, ATP2A2A, ATP2A2 coding upstream 603625 7319816 ~ 7334993 (-)
G65082 NA non-coding downstream 56252 6647532 ~ 6648170 (-)
G65047 NA non-coding downstream 171766 6496859 ~ 6532656 (-)
G65049 NA non-coding downstream 193802 6507831 ~ 6510620 (-)
G65046 NA non-coding downstream 208477 6495479 ~ 6495945 (-)
G65045 NA non-coding downstream 209342 6494438 ~ 6495080 (-)
G64981 NA non-coding upstream 13367 6729558 ~ 6735582 (-)
G65102 NA non-coding upstream 25553 6741744 ~ 6804348 (-)
G65131 NA non-coding upstream 228988 6945179 ~ 6945596 (-)
G65132 NA non-coding upstream 231200 6947391 ~ 6949007 (-)
G65177 NA non-coding upstream 236147 6952338 ~ 6952745 (-)
G64918 NA other downstream 607942 6093689 ~ 6096480 (-)
G64877 NA other downstream 787411 5916257 ~ 5917011 (-)
G64564 NA other downstream 1461496 5049155 ~ 5242926 (-)
CI01000010_04612793_04613017 SMIM15 other downstream 2090866 4612460 ~ 4613135 (-)
G64237 NA other downstream 2468006 4229950 ~ 4236416 (-)
G65453 NA other upstream 947500 7659435 ~ 7672343 (-)
CI01000010_07880416_07900104 NA other upstream 1126445 7880375 ~ 7900104 (-)
G67099 NA other upstream 1925499 8641690 ~ 8674897 (-)
CI01000010_11929215_11933223 DYNLL6, DYNLL1, DYNLL2A, DYNLL2, DYL1, DYNLL1.S, BRAFLDRAFT_130244, DYNLL1.L other upstream 5212770 11928448 ~ 11933343 (-)
CI01000010_11965317_11969111 NA other upstream 5248674 11964865 ~ 11969710 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00010604 LOC108425189,LOC107554527,LOC107706776,LOC108276927 coding CM030129.1 CM030129.1 36875726 ~ 36896641 (+)