CI01000010_06456276_06481282 (SLC5A5)


Basic Information

Item Value
gene id CI01000010_06456276_06481282
gene name SLC5A5
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 6456276 ~ 6481427 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000010_06456276_06481282.mRNA
CTAATCTTTTGAAAGTCAAGAGAACATAACAGCGGGTGGATTGAGAATGCATTGTGATTTCTGAGTTTGTTGTTACAGCTGACAGTCTCTTGAAGAGAAGGACTCTACTCATTTAGGCTCTGGCAGAGTCTAAACAGAGGACACTATGGCTTCAGACTCAGACAACTTGGGCTTCTGTTTGGTGGACTATGCAGTATTTGCTGCAATGCTGGGGGTATCGGTGGCCATCGGGCTATTCCAGTCTCTGAGAAAGACCCAGGGTCGCTCGAACGTGGACAACTTCTTCACAGGGGGCAGGGGTTTCTCTGCTGTGCCGGTTGGACTGTCGCTCTGTGCCAGCTTTATGTCAGCTGTCCAAGTGCTCGGTGTGCCATCAGAGGCATATTTATATGGCTTTAAGTTCCTCTATATGTGCTTGGGACAAGCCCTCAACTCCCTTATTACTGCAGTTGTGTTTGTTCCTGTGTTTTATCGTCTCAAAATCACCAGTGCACATCAGCTTCTCTACACTGGAATAGTGATCTTTGCTCCTGCAGTCATCTTGAATCAGGCCACAGGCCTAAATATGTGGGCGTCTCTTTTCTCAACTGGACTCATCTGCACATTTTACACAACAGTGGGTGGTATAAAGGCTGTAATCTGGACAGATGTGTTTCAGATTGTAGTCATGCTCTCTGGGTTCATTGCGGTTTTCATTCAGGGCACCATATTGGCAGGAGGGCCTGCCAGAGTTTTGGAAATCGCCAACAATGGATCTCGCATCAATTTTAATGATTTTGCCTTAGACCCTCAGAGGCGGTACTCGTTCTGGAGTTTCACAGTGGGCGGCACAATGGTCTGGTTATCCATGTATGGAGCCAATCAGGCCCAAGTACAGCGTTACATATCATGCAGGACTGAGAAACAAGCCCAACTGGCGCTGCTGGTTAATCAGGTGGGTCTGTGTCTGATTGTGAGCAGTGCAGCCACCTGTGGCATTGTGATGTTTGCTTTATACTCCAACTGTGACCCACTGAAGACTGGCAGAATATCTGCACCTGACCAGTACATGCCGTATTTGGTTTTGGACATTTTCCGGAATCATCCAGGCTTCCCGGGTCTTTTTCTAGCCTGTGCCTACAGTGGAACTTTAAGTACTGTCTCCACCAGCATTAATGCCATGGCAGCTGTTACTATGGAGGATGTAATGAAGCCGTGGCTAATCACTGTTTCGCAGAGAAAACAGCTCTTGCTCTCCAAGTCATTATCTCTGTTGTACGGGCTTGGCTGCATTACAATGGCTGCGCTCTCCTCTCTGCTGGACTGGGGAGTCCTTCAGGGTTCGTTCACAGTCATGGGTGTAGTGAACGGTCCACTGCTGGGAGCCTTTGTGCTGGGCATGTTTGTTCCAGCCACAAATAAACCGGGGGTGTTCTCAGGTGTGGCTGTGGGTTTCTGTTTGTCTCTATGGCTTGCTGTTGGAAGCACAATCTATCCTCCAACACCACAAATTATGGGTGTTTTACCCACTAGTGCTGATCGCTGTCTAACAACTAATGCAACACTTAACAGCACCACGGTAGTCGCTAAATCCTCTATCGTGGCATCATCAGTCCCCCAGGATTATGGCTTTCAAAATATCTATTCAATATCCTACCTGTACTTCGGAGCCCTGTCAACTAGTGCAGTCATACTAGTAGGTGTGGTGGTTAGCTACATTACAGGACCCACCAAGAAGGATTCTATCAGCCCTGGTTTATTACGGTGGAACTTGGAACAAAAGACCTGCGATGTGTCCTGTCATAACTTGAATGAAACTACGACACACAATCCCACCGAAATCCTTCTCAGTCCAAAAGAACTATTTTCCACTGCTGATAAACAAGTTGTTTTACTGAACAAAGTTCTTTTCGTCCAATCAGCAGATTGCTTTGGTGAGAAAACCATGAGTGAAGAGGAAGAAGTGCCCTTGATGAAGAGCGAAAGGGCCGGCAGTCAGAAATCCAGCTGTGACTCTGCCCTGCAGGTGCATCTGTACTACTGCCCCAGCTTAAATTCAGAGACCTCTTTCACCATCCCCACGGGACACATCACAGCAGAAAGCGTGTGTATGCTTGCTGCAAAAGCCAGCGGAATACTTCCTGTGTTTCACAACCTGTTTGCTCTGGCATCAGAAGATCTTTCATGCTGGTATCCACCAACCCATGTGTTTAAGAGTGAGGAGACTATCAAAGTTTACTACAGAGTGAGGTTTTTCTTCTCAAGCTGGTTCGGTCAAGGGTCCAGGGCATCGTACCGCTTTAGTCTCAGCAGAGGACGAATCTGTGCTGTGCTGGACTACTGCGTCATTGATTATCTATTTGCTCAGTCCCGCAGTGATTTTGTGTCTGGACGTGGCGGGATTTCTCCTGCTTTGAGCTTGCAGCAGGAATGTTTGGGTATGGCAGTAATAGATCTGTGGCGAATGGCCAAAGAGAGAAACCAGAGCCTTGCTGAGATCTGCAATACAACAAGCTACAAGTCCTGCCTCCCAGAGACTCACAGACAAGATATACAGCGTATGAGTCGCCTAGCGCGGTATCAGATCCGCAAAACGCTGAAGCGCTTCCTAAAGAAGCTGGGCAGATGCTCAGCTGGAGAACGTAACCTGAAGCTCAAGTACCTGATGGAGCTGAATATGGTGGAGCCGGCTTATGGTTCAGAAAGCTTCACTCTGGATCATTCTGGATGGTTAGAGCAGAGCGAGCAGCAGAGGGTCAGAGCCGTTCAAGTGTCTGGAGAGGGAGGGATTCAGATACAGACCACAGAGAGCCAGGAATGGCAGACGTTCTGTGATTTCCCCCAGATCACAGACATTAGTATTAAGCGTCTTTGTCAAGAGCAGATGCCCCTGGAAGGAAGGGTGGTCACCCTCACACGCCAGGACGACCAGTGCATGGAGGCTGAGTTTCATAACCTAACTGAGGCTCTTTCCTTTGTATCTCTGGTTGATGGCTATTTTAGACTGACTACAGATTCGACTCACTATTTCTGCGCAGAGGTGGCCCCGCCAAGCTTACTGGAGGACATACAGGATTACTGCCACGGCCCGATCACGTCAGAATTTGCAGTTCACAAGCTTAAGAAAGCTGGAGCCAAAAATGGGATGTTCCTGTTACGTCACAGTCCCAAAGACTTTGACAAGTACTTCCTCACTGTTTGCATACAGGTACCAGATTTACTGGACTCATACAAACATTATAAAGCACCAAGTTTTGGGTTTTCACTAACAACTCCTCTAGGGATGGATTACAAGGACTGCCTGATAGAGAAAAATGAGAAGTTCAGTCTGGCTGGGATCCACAAGTCATTCTGTAGTCTAAGACAGCTCACAGACTTCTATCAGCACAATACACTTCTCATGTCAGATATCCCCGTCACTCTGGGCAAGTGCTGCCCACCCAGACCAAAAGAACTTACCAACATGATCATTGTTCGTAACAGCAGTATGGTTGAGATGCCCACATCCCCCATGTTACAGAGACAAAAACCAAGCCACATGCAGTTCCACATGATTAAACATGAGGACCTCACCTGGAAGGAAAGCTTAGGCCAAGGCTCCTTCACGCATATCTTTAGAGGCGTTAAGACAGACCAGCGGGACGGAGTGACACACTCCACGGAAGTCCTTCTGAAGGTCCTGGATGCAAATCATAAAAACTGCTGGGAGTCTTTTTTTGAGGCGGCCAGTTTGATGAGTCAGATTTCCCACAAGCACATTCTCCTGGTATATGGCATCAGCGTGCACAAATCCAAAAACATCATGGTGCAGGAGTTTGTGAAGCACGGCGCACTGGACCTATACCTGAAGAGGAGCACGTCTGTCTCAGTCAGCTGGAAACTAGATGTGGCCAAACAACTGGCCTGTGCTCTCAACTTTCTG

Function

symbol description
slc5a5 Enables sodium:iodide symporter activity. Predicted to be involved in iodide transmembrane transport and sodium ion transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in thyroid follicle and thyroid primordium. Human ortholog(s) of this gene implicated in congenital hypothyroidism and thyroid dyshormonogenesis 1. Orthologous to human SLC5A5 (solute carrier family 5 member 5).

GO:

id name namespace
GO:0006810 transport biological_process

KEGG:

id description
K14385 SLC5A5, NIS; solute carrier family 5 (sodium/iodide cotransporter), member 5

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000010_06456276_06481282.mRNA True 3901 mRNA 0.48 27 6456276 6481427

Neighbor

gene id symbol gene type direction distance location
CI01000010_06253230_06263855 LONRF1L, LONRF1 coding downstream 192421 6252366 ~ 6263855 (-)
CI01000010_06180084_06216445 DOC2D coding downstream 239831 6180084 ~ 6216445 (-)
CI01000010_06107283_06108881 UGT5E1 coding downstream 347287 6105579 ~ 6108989 (-)
CI01000010_06083696_06089271 NA coding downstream 366702 6083543 ~ 6089574 (-)
CI01000010_05921406_05962819 NA coding downstream 493457 5921124 ~ 5962819 (-)
CI01000010_06504062_06505040 NA coding upstream 22556 6503983 ~ 6505276 (-)
CI01000010_06588155_06615737 ITGB4 coding upstream 105793 6587220 ~ 6615737 (-)
CI01000010_06625010_06627729 NA coding upstream 142763 6624190 ~ 6627729 (-)
CI01000010_06639960_06641129 NA coding upstream 158153 6639580 ~ 6641139 (-)
CI01000010_06681043_06685375 NA coding upstream 199336 6680763 ~ 6685375 (-)
G65041 NA non-coding downstream 17194 6438865 ~ 6439082 (-)
G65040 NA non-coding downstream 25887 6430189 ~ 6430389 (-)
G65039 NA non-coding downstream 26517 6429543 ~ 6429759 (-)
G65038 NA non-coding downstream 26893 6429081 ~ 6429383 (-)
G64993 NA non-coding downstream 130458 6266792 ~ 6325818 (-)
G65045 NA non-coding upstream 13011 6494438 ~ 6495080 (-)
G65046 NA non-coding upstream 14052 6495479 ~ 6495945 (-)
G65047 NA non-coding upstream 15432 6496859 ~ 6532656 (-)
G65049 NA non-coding upstream 26404 6507831 ~ 6510620 (-)
G64969 NA non-coding upstream 66337 6547764 ~ 6728491 (-)
G64918 NA other downstream 359796 6093689 ~ 6096480 (-)
G64877 NA other downstream 539265 5916257 ~ 5917011 (-)
G64564 NA other downstream 1213350 5049155 ~ 5242926 (-)
CI01000010_04612793_04613017 SMIM15 other downstream 1842720 4612460 ~ 4613135 (-)
G64237 NA other downstream 2219860 4229950 ~ 4236416 (-)
G65453 NA other upstream 1182264 7659435 ~ 7672343 (-)
CI01000010_07880416_07900104 NA other upstream 1361209 7880375 ~ 7900104 (-)
G67099 NA other upstream 2160263 8641690 ~ 8674897 (-)
CI01000010_11929215_11933223 DYNLL6, DYNLL1, DYNLL2A, DYNLL2, DYL1, DYNLL1.S, BRAFLDRAFT_130244, DYNLL1.L other upstream 5447534 11928448 ~ 11933343 (-)
CI01000010_11965317_11969111 NA other upstream 5483438 11964865 ~ 11969710 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00006030 NA coding CM030142.1 CM030142.1 15018786 ~ 15041927 (+)