CI01000010_05921406_05962819


Basic Information

Item Value
gene id CI01000010_05921406_05962819
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 5921124 ~ 5962819 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000010_05921406_05962819.mRNA
ATGAGCGGACAGGTGCTCCGCAAACTTCATGCTGGCGGAGCAGATATCCACAGTCGGACTATAATAATATCCTCGGGTCGGGCAGCGGCTTCTTCGGGGCTTTTGTTATTTCTGTCACTAAGTTACGGAGCCGCATGCGCTGCGTTGATTTGCGCTCTGTCTAAATCCTGTCCGGTCTATCACAGTCCACTATTCCCCGGTCCCACATATTACCCCGTTCAAAACTCAGCGACGGGCTCCGGTACTGATCCAGCCCGGCCTGACACTGGAGAGCCGCTTGGTGGAGGATCCGACTCGGATTCAGATTTCGGATTAGGGAAATTTGATTGTGGCGCTGCGGATACAGCGCTTCGATTAGAAGGAGCAGATCTAGAGAATGAGTTTGAGGCGGCAGCGGACCGGGTCAGAGATCTCGTCCAGACAGCCAGTAGAGAGCAGCTGCTGTATCTGTACGCCAGGTTCAAACAGGTCAAAGTTGGAAAGTGCAATACAACAAAACCTGGTTTCTTCGATTTTGAGGGTCAGAGAAAATGGTCAGCATGGAAACAGCTGGGGGACATGAGTGCGGAGCAGGCCATGCAGGAGTATGTGTCCTGTGTACATTCTCTGGATCCAGAAGGCAGTCAGAAGTCGTCGGAGCGAAGAGGAGGAGAGAAGCTAACTGGATTCGGTGGGCCAGCGGTTAGCTCTCTGTACCAGGAGGAAAAAATAAGGGAAGAGGACAAAAATATTTTCGACTACTGTCGAGAGAACAACATCGAACACGTCAGCAAGGCCATCAGCTCCAAGAAAGTGGACGTGAACACAAGGGACGAAGAGAGATCAGTCCTTTACGTTTCCCACACGGCTAAAACTCCAAAGGTCACTGGATGCACCATCCATCCTCTCATCCCATTTTTATTCATATATCACCATGGCCAACTGGCCCGTTTCATTTCTTTCAGCACTCCAATTCTGAAAGTGGGGAACCAGTTGGCTCACCATCAGGGACGAGCTCTACTGCACTGGGCGTGTGACAGGGGCCACAAAGACCTGGTGTCTCTACTCTTGCAGAATAACGCTGATATCAATAGCCAGAGAGAAGTATCTGTATCAGAGAAGGATGATGAAGGACAGACAGCACTGCACTATGGTAAGAACGCAACTATGCTATGGCGAGCAAAGTCTTTATTCTTAAAATTCAAATCCTCAGCTTGTGAGTTTGCAGAAATCGTTGAATTACTCCTGAAGGCCGGAGCTGACCCGTCAATCAAAGATCAAGAAGGCTCCCTTCCAGAGGAGGTGACAGAGTCTAGTGCCATCTCCTCTCTTCTGCGCCAGTACACTGCTCCTAAAGGATAAATCTCACTCTGTGAAACCCAAAAATCAATCCTAACCCACATGATCACCATCCTGTTAAAAGTTTATACAAACTGTGCTCCTTATCCAGATGGTACATGCTGTCAAATCAACAATAGTTCCCGAAATGAACTCGATCAGCTCAGCATTTTAGAACTATTCTAGTTCATCATTTGGCTGTGGAGCACAGATGTTGTACTTTCAAGCAGTTAAGTTCAGACAACCTGTCCTCCCTGTCCTAGAATGGTACATTCCAATGAATGTGTTACTGTTGTTACTATTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000010_05921406_05962819.mRNA True 1623 mRNA 0.48 11 5921124 5962819

Neighbor

gene id symbol gene type direction distance location
CI01000010_05743309_05757933 CACNA1E coding downstream 163191 5743309 ~ 5757933 (-)
CI01000010_05734012_05743267 CACNA1E coding downstream 177625 5733797 ~ 5743499 (-)
CI01000010_05672032_05717224 CACNA1E coding downstream 203468 5670007 ~ 5717656 (-)
CI01000010_05636005_05648665 NA coding downstream 272459 5635906 ~ 5648665 (-)
CI01000010_05627867_05634808 SOAT1 coding downstream 286316 5626570 ~ 5634808 (-)
CI01000010_06083696_06089271 NA coding upstream 120724 6083543 ~ 6089574 (-)
CI01000010_06107283_06108881 UGT5E1 coding upstream 142760 6105579 ~ 6108989 (-)
CI01000010_06180084_06216445 DOC2D coding upstream 217265 6180084 ~ 6216445 (-)
CI01000010_06253230_06263855 LONRF1L, LONRF1 coding upstream 289547 6252366 ~ 6263855 (-)
CI01000010_06456276_06481282 SLC5A5 coding upstream 493457 6456276 ~ 6481427 (-)
G64879 NA non-coding downstream 1495 5919243 ~ 5919629 (-)
G64867 NA non-coding downstream 31367 5888945 ~ 5889757 (-)
G64818 NA non-coding downstream 40101 5827578 ~ 5881023 (-)
G64837 NA non-coding downstream 84765 5834014 ~ 5836359 (-)
G64721 NA non-coding downstream 329269 5591481 ~ 5591855 (-)
G64910 NA non-coding upstream 66180 6028999 ~ 6029709 (-)
G64911 NA non-coding upstream 69217 6032036 ~ 6058143 (-)
G64916 NA non-coding upstream 99027 6061846 ~ 6062081 (-)
G64794 NA non-coding upstream 111880 6074699 ~ 6075674 (-)
G64918 NA non-coding upstream 132622 6093689 ~ 6096480 (-)
G64877 NA other downstream 4113 5916257 ~ 5917011 (-)
G64564 NA other downstream 678198 5049155 ~ 5242926 (-)
CI01000010_04612793_04613017 SMIM15 other downstream 1307568 4612460 ~ 4613135 (-)
G64237 NA other downstream 1684708 4229950 ~ 4236416 (-)
CI01000010_03890095_03899058 SSBP3B, SSBP3, SSBP2 other downstream 2021213 3890069 ~ 3899058 (-)
G65453 NA other upstream 1700872 7659435 ~ 7672343 (-)
CI01000010_07880416_07900104 NA other upstream 1879817 7880375 ~ 7900104 (-)
G67099 NA other upstream 2678871 8641690 ~ 8674897 (-)
CI01000010_11929215_11933223 DYNLL6, DYNLL1, DYNLL2A, DYNLL2, DYL1, DYNLL1.S, BRAFLDRAFT_130244, DYNLL1.L other upstream 5966142 11928448 ~ 11933343 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_035510 acbd6 coding NC_007119.7 CM002892.2 14381272 ~ 14441812 (+)