CI01000010_05636005_05648665


Basic Information

Item Value
gene id CI01000010_05636005_05648665
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 5635906 ~ 5648665 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000010_05636005_05648665.mRNA
GGACTGCAGGGTGTTTCGGGGAGTAGAGGACAGGATGGCACTCATGGTACACCTGGATCCATTGGACCACCGGGGTCAGATGGAGATAGAGGACCTACAGGACCCCAGGGTTTACAGGGAAAACCTGGTGCACCAGGAATTCAAGGTCCTATTGGAAAAACTGGTGTCAAAGGCAGAGAGGGTTCAGTAGGGTTTCATGGCAGTCCTGGGGAAAAGGGGAAAAATGGCCCTGAGGGGCCAAAAGGAAAGCCTGGTCAGCCAGGCCCACAAGGAAACATAGGCCAGTGGGGTGAGACAGGTCTGCAGGGGCCGGTAGGAAATCAAGGGCCCCGGGGACCTCCTGGGCCATATGGAGTGGCTGGGTACCCAGGTAAAGATGGACCACCTGGACCCATCGGACCTCCAGGAGATAAAGGCAATATGGGGTTGAGTGGTGCTCCAGGGCAGAAGGGAGATCCTGGATCACCTGGTGAAAAAGGTCAGTCAGGTGTAAGAGGTCAATCCGGCTTGGTGGGAAAGTACGGTCCTGGGGGGAACATGGGAGAAGCTGGTGATAAGGGCGACAAAGGTCTACGTGGACTTGTTGTGGGTACCGCTTCCTCCTTTACAGACAATGTAGCCTATGGGGAAATATATATTTATTTGGTTTATTTCAATGTTCTTTGGATATTAAAGGGTGAGGCAGGAACAAATGGGTCTCCAGGTCCAAATGGTGCTGTTGGATTACCGGGAGAGCCTGGATTTAAAGGGAATTCAGGGGGCCCTGGGAAGATAGGATCAATTGGTATTCAAGGCCCAAGCGGGAAGAAAGGAGAGCCTGGAACAAGAGGCAAAATGGGTTCAGTGGGTCAGCCAGGAGCTAGGGGTCCTCATGGTCTGAAGGGAAAACCAGGATCTTCAGGACCTCCAGGGGGAAAAGGAGTCAAGGGTCAATCAGGGCCAAAAGGGAAGAGTGGAACAGATGGACTGCTGGGAGTTATAGGCACTGAGGGCGACCCAGGTGACATCGGATTCAGAGGACCTCCAGGGAAACCAGGTCCGCCAGGTGGTGCTTTGAGTTTACCAGCCTCTTCATCACAGGGCTCTATAGGACCCAAAGGGAAACCAGGGCCCACTGGACTGATAGGACCGAAGGGAAAACAAGGTGCTCCAGGGTACAAGGGGCGGCCTGGGCCAAAAGGCATACAGGGTGAATCTGGTGCTCGTGGGCCTCCTGGTGGCATAGGATTTCCTGGTTCAACTGGTTTACCTGGAAGGAAGGTGTGTACTGAAATTGCAGGTGTGATTGTAATTTATATAGCTCTGCTTATCATTACCCTGTACCTGAAACAGGGTATGAAAGGAGTTCAGGGAATATCAGGACAAAAAGGTGTGAAAGGTCGGAGAGGTCCACCTAAAGCAAGGTTATTATCACGAACGTCTCGATTTGATGACCCTGAAGATGGGATTGAGGAAAATAGCCACTCACAAGGCACCAAAGACAGCCCAGCAACCACCTGCAGAGAGCTGAGTCTCATCCAGCCTCACCTCAGAGACGGGCACTACTACGTTGATCCTAACCACGGATGTCCATTTGATGCTCTCCGTGTGTTCTGTAATTTCACTGCTGGTGGTCTAACTTGTGTGTCTCCTGTCCAGTCTAAAATTTCAGGAATATCGCAATCAGTGGACAGATCTAAAAAGTGGTTTAGTGAGCTTCACAGAGGCTTCAAGTTTGAGTACAGAGATCTCAGTGTTGTCCAACTGCGATTCCTACGGTTACACAGTAACTCTGCCACACAAAGCATCAGCCTGAAATGTCCCAAAAAACACAGCCCCACTGCTAAACACAAGGATAAAACCAAGAGTGTGCTCCACTTACGAGGAGACTCCAATGAAGAAATCCATCCATCCCATGTCATCGTATCACAACATGGTTGTGAGACCAGGATGGGACAGGAGCTGAAAGAGCCACAAGAGAGGTGCCCTGCCCCAGTAATGGTCATTCAACTCTCACCTATTGGAATCAGTTTCAACATGTTTCATCTAGTGTTGTACTATGTTCTGCTTGTACAAACTGTACAACCCATCATTTGTATGACACTGTCAGCTGTCATCATTACATGTCTTTGACATTATTCATTTACAGGGCTCAATTAGAGATTTATTCTGGTCAGGTTAGTTTTCAGTGAAGAATTTTAATGTGCTAGAAAATGGGTGTTCTTAATTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000010_05636005_05648665.mRNA True 2211 mRNA 0.49 25 5635906 5648665

Neighbor

gene id symbol gene type direction distance location
CI01000010_05627867_05634808 SOAT1 coding downstream 1098 5626570 ~ 5634808 (-)
CI01000010_05594817_05606739 ABL2 coding downstream 29167 5593631 ~ 5606739 (-)
CI01000010_05538251_05562058 FNBP1L coding downstream 73848 5537781 ~ 5562058 (-)
CI01000010_05516002_05519888 NA coding downstream 115988 5515967 ~ 5519918 (-)
CI01000010_05508908_05511594 NA coding downstream 124202 5508779 ~ 5511704 (-)
CI01000010_05672032_05717224 CACNA1E coding upstream 21342 5670007 ~ 5717656 (-)
CI01000010_05734012_05743267 CACNA1E coding upstream 85132 5733797 ~ 5743499 (-)
CI01000010_05743309_05757933 CACNA1E coding upstream 94644 5743309 ~ 5757933 (-)
CI01000010_05921406_05962819 NA coding upstream 272459 5921124 ~ 5962819 (-)
CI01000010_06083696_06089271 NA coding upstream 434878 6083543 ~ 6089574 (-)
G64721 NA non-coding downstream 44051 5591481 ~ 5591855 (-)
G64746 NA non-coding downstream 130924 5501157 ~ 5504982 (-)
G64733 NA non-coding downstream 150477 5485179 ~ 5485429 (-)
G64712 NA non-coding downstream 162910 5472768 ~ 5472996 (-)
G64710 NA non-coding downstream 165233 5470404 ~ 5470673 (-)
G64818 NA non-coding upstream 178913 5827578 ~ 5881023 (-)
G64837 NA non-coding upstream 185349 5834014 ~ 5836359 (-)
G64867 NA non-coding upstream 240280 5888945 ~ 5889757 (-)
G64879 NA non-coding upstream 270578 5919243 ~ 5919629 (-)
G64910 NA non-coding upstream 380334 6028999 ~ 6029709 (-)
G64564 NA other downstream 392980 5049155 ~ 5242926 (-)
CI01000010_04612793_04613017 SMIM15 other downstream 1022350 4612460 ~ 4613135 (-)
G64237 NA other downstream 1399490 4229950 ~ 4236416 (-)
CI01000010_03890095_03899058 SSBP3B, SSBP3, SSBP2 other downstream 1735995 3890069 ~ 3899058 (-)
CI01000010_03527436_03530341 NA other downstream 2104254 3527408 ~ 3530359 (-)
G64877 NA other upstream 267592 5916257 ~ 5917011 (-)
G64918 NA other upstream 445024 6093689 ~ 6096480 (-)
G65453 NA other upstream 2015026 7659435 ~ 7672343 (-)
CI01000010_07880416_07900104 NA other upstream 2193971 7880375 ~ 7900104 (-)
G67099 NA other upstream 2993025 8641690 ~ 8674897 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_035516 si:dkey-21p1.3 coding NC_007119.7 CM002892.2 14855471 ~ 14883692 (+)