G116076


Basic Information

Item Value
gene id G116076
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 35930934 ~ 35933246 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU156813
ATACACTACATTTCTCATGTAGAGAATAGTTTGGAAAGTGTTCTGTACCTCACAGAACTAAATCCTAacctttattattttaccattttaatctGTGATTATACATACATTCCCTGCAGTGCACATACCTCTCACTTTTGGAAGTGCTAAAGAAGAAATATGTGTATGAAAGttttagtttctttttattCATCTGAGCAGGGATGTAGACCTGGCTTTTCACACTAGAACTGGCAGCTATACTGTAATGAGTGTAAGGTCTTTGCCAAATAAAGATCAGAATTTTTAGCGTCTATTTAATAGTGTTTGGTTATGGATCTGCCAGAAAAACCTACTGTTCTAAAAGCAGTTTTATTAGACCACCACTAGCAAGGTTTGCTTATTTAGTCTCTTTAGATTTTGTTAGAAATTTAAGTCCTCTATTTTCATAAACTACCACATAAGAAATgccaaatgaaaaaaagaactaTGGAATATAAGTATGCAAAAAGAGCTTTTAATAAATGACTATAATCCTGAATAATAGATACCCATTTAATACACAACCTTTCTGTATAATAAGAGTGTTGCTCACTACAGTATAGCTGTTAAAAGGTTAAGCCAAACAAAATCAACTTGTAACACTCACACAAGTACATTACAATGCACATAATGTACCCTAAGAATGCGATGATAAACTATTTGGACACTTTTCAACACTTTTGAGAGAATCAATCTAGTTTTAACATCTATATTTTTGGTATTATggtgtgaaaaaacatttttgcaataacagATATTGGAGTCATATACAAGTTTGTCTAAGTCGTGAGAGAGGATGATCTGTGGCAAGATCTACAGATTTCGCCACCTTTCAAAGAGGTCTTGATCAGCACTGAGTTTGCTGTGTTTCTCAGGCCTTGTCTTGGTATATGTGTGCTGTGGGTTAATAAATCAGGCTTGGGggtggtggggtgggggggtatAAGGGAGATTGTACTTGTTTTAACTGTGAGATATATGGGATCATAGATAACCTGATTGTGCCATAGGTGATTCTTTTTGCCAAACAATCTTTGAAAAGAGGTGTATTGTTATTAACTTGTGGGGAAATTAAGGTACAGTAGCACACATCTTAGATtcctgtgtttgtgttcatGGTGTGAGGCCTCTTTGgggatcttttttttcttcaggggTTTTTTCATGGTAATCATGAGTTTCATTCCATTATCAGGGTAAATCCTAAGTAGCTTTTTGCTGTGAATCTCATTCGTCCTGGGCTGGTTACACTTTAGACCCAGACTAGTTGCACTGAAAATGTAATTAGGATAGCAATGATCCTAAATTATTGTAAATCCCACTGTAAAAGTACAAGTCTTCAGAATTTACAAAGAATTGTTCAGCATTCACTTAGCATTTATAAGTATTTAGTGATTTAACCGCAATCTTTGTTTCGACTTTTCTTGATGACTGGTTTGTTGTTTTCATCAAAACAACTATGTACCTCTCCCTTGATGCAATGTCATACTTGGGATTTGCATTCATCAAGTTCTATTTTCATCCAAACCTGAGATGAATTTTCAACCGAAGAGGGTCTGGAAGGAAACCTAACTGACAGCTGAGTGACTTATTGGCAGTTGGGCTTCATATATTGTCTTAATAAGGCTTAGGCAGAGCTCAATGACTGTGATGTACTGTACATTAATGTGAACGTGTGCCAAACGTGTCCGGGTAAGAGAGAGATCGAGAGCGGCTCACGCACGGACTCTTGGTCAGAGCCTGCTGTTCCTGAAGCTCTTTGAACAGTCTTACTCTCTGTATGAATGTAACACACAGAGATGGACTCGTAAAGCGCCGCTTCAGGCGATTTACACTTGATGTTTCTATCCTTGctgatgaaaaaaaagtgttaccgTTTTGTCTTGGAATTTCAGAATTTTTTCCAGTTGCTTTCtttgtatacagtatttacattttcttgtaagtatgtatttctgtgtgtgtacataACATGTATATGAGTATGCGGTGGCAGTCCGCTTCTCTTGTGTTCGTTTACGTAACACACTACTTTCGCCACAGCCGTTGAATCGTAGGAAGAACAGTCAGTGCATCAAGATTCATTTCATTATATGGACAATGCATCGTCGTCTCTGTGCAAAGAGATGAAAACTTCAGTTGTCTGTTGTAGTTGCAGTCCTAACCCTTCCCTCCTCCTTACAATGCAAAACAGGCATGCCCCATATTGAATGTTATTTTCAGTCATATAAACCTTTGATGAGGAAGGCTTgtacaataaaaatgaatgtgaCTAAATGTAATGTCAATATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU156813 True 2313 lncRNA 0.37 1 35930934 35933246

Neighbor

gene id symbol gene type direction distance location
LOC103031425 LOC108440580,LOC107673588 coding downstream 11517 35908222 ~ 35919417 (-)
LOC103034932 eno1b,LOC108440571,LOC107721178,LOC107568188,LOC108271510,LOC107712086 coding downstream 41491 35882301 ~ 35889443 (-)
ccdc36 NA coding downstream 82031 35844572 ~ 35848903 (-)
LOC103035873 LOC108440479,LOC108271864 coding downstream 92972 35828882 ~ 35837962 (-)
LOC103031744 LOC108271679,LOC108439739 coding downstream 147684 35777920 ~ 35783250 (-)
LOC103032599 frs3,LOC107584505,LOC107667350,LOC107568202,LOC107673473,LOC107721202 coding upstream 120 35933366 ~ 35946834 (-)
LOC103031953 NA coding upstream 27407 35960653 ~ 35967790 (-)
ddi2 ddi2,LOC107673502,LOC107721177,LOC107667352,LOC107712079 coding upstream 35899 35969145 ~ 35979546 (-)
LOC103030273 prkcda,LOC103030273,LOC108440644,LOC107673500,LOC107712078,LOC107721176,LOC107667398,LOC107582675 coding upstream 48848 35982094 ~ 35999917 (-)
LOC103029739 NA coding upstream 79931 36013177 ~ 36029775 (-)
G116092 ppil1,LOC107667353 non-coding downstream 24932 35901252 ~ 35906002 (-)
LOC111193771 NA non-coding downstream 32217 35892638 ~ 35898717 (-)
G116089 NA non-coding downstream 49367 35881367 ~ 35881567 (-)
G116078 NA non-coding downstream 91898 35838834 ~ 35839036 (-)
G116060 rab7a,LOC106563067,LOC105015198,LOC106567937,LOC107562649,LOC107665199 non-coding downstream 136457 35786347 ~ 35794477 (-)
G116097 NA non-coding upstream 14485 35947731 ~ 35948182 (-)
G116166 NA non-coding upstream 110120 36043366 ~ 36044196 (-)
G116171 NA non-coding upstream 132369 36065615 ~ 36066279 (-)
LOC111193773 NA non-coding upstream 142232 36075478 ~ 36076803 (-)
LOC111193775 NA non-coding upstream 261299 36194545 ~ 36254205 (-)
LOC103034399 LOC108440553,LOC108271943,LOC107584416,LOC107721179 other downstream 50643 35869803 ~ 35880291 (-)
G116068 myhz2,LOC108440470,LOC108443907,LOC107385141 other downstream 115612 35813621 ~ 35815322 (-)
LOC103033855 oxtr,LOC107749620 other downstream 1079782 34825836 ~ 34851152 (-)
G115681 emc3,LOC107584459,LOC107657885,LOC107667035,LOC101173295 other downstream 1408516 34520957 ~ 34522418 (-)
nprl2 nprl2,tusc4 other downstream 1715508 34210079 ~ 34215426 (-)
LOC103031109 uqcc2,cf125,LOC108440614,LOC107580205,LOC107667355,LOC106565356 other upstream 21863 35955109 ~ 35958818 (-)
LOC103028059 ghrl other upstream 123317 36056563 ~ 36062284 (-)
LOC103023810 NA other upstream 1088929 37022175 ~ 37031363 (-)
G116581 eif4b,LOC108441049 other upstream 1108115 37041361 ~ 37045788 (-)
tubgcp5 tubgcp5,chst7,LOC107585157,LOC107582726,LOC107673606,LOC107753407,LOC107582727 other upstream 2300228 38233474 ~ 38248624 (-)

Expression


Co-expression Network