G116060 (rab7a,LOC106563067,LOC105015198,LOC106567937,LOC107562649,LOC107665199)


Basic Information

Item Value
gene id G116060
gene name rab7a,LOC106563067,LOC105015198,LOC106567937,LOC107562649,LOC107665199
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 35786347 ~ 35794477 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU156787
acatttaattgattttacacacgtaacaaaaataataaaagagcaTGAACTGAAATACACACAGAAGAGCAAATCCAAAAGTGGGCGTGGCTGTGCAACAGCTATGTAAAATTGGctccacaaaagaaaaaaaaaaacaatcaagacAAAAGAATAGAAACAAGACTTAcagttaagtaaaaaaaacagtcatgtctttctctctaaactctacatatacatataagcAATATTTACATACAGCTGACATGCTTAGCATGAAGGGAAACAGGTGGGAGTAAGACAAGCCTTTAACCAAAGCCTGAAGCAGttagaaggaaaaaaagaggtTAAGAGTCTATTTTTTCGGTTTCGGCGCCTTCGCCTTGGTGGTCATCTTCTTGGCAGGGGCTGCTGGCTTTTTGGGGGCTTTCTTGGGCTTGGAGGTTTTCTTCTTGGGGGCGGTGGTCGCCTTCTTCGCGCTCTTCacgcttttctttttcttctcctttttctccgTGGCTTTTTTGGCAGGCTTCTTGGCTGGTTTCGGCGCTTTGGCGGGCTTGGCGGTGGTGCTCTTCTTGGTTTTCTTGGTCTCGAATTTCTTCTTGTTGAGTTTGAAGGACCCGTTGGCGCCCAGACCCTTCACCTGCACCAGCGTGTCGTTCAGCAGCAGCGCGCGGATCGAGTACTTGAGGTCAATCTTGTTGCCAAGCACCACAAAAGGGAAGTTGTCTGGGTCACGAGGGCTAGCCTGTATCAGAAACTCATCTCTCCATGAATCCAGAGTCTTGAAGGTGGTGGGAGCAGTAACATCATACACCAGCACACAGCAGTCCGCTCCACGATAAAACGCCACCCCCAGAGACTGGAACCTCTCCTGTCCGGCTGTATCCCAAATCTGACAAAGACACAGACAATCTGGTGAACACAAAACACTGTCTTAATTGTGCCAGAGCCATtcttgtaataaatgtttctgtaattgtttgaaaaaaaagcaACCTTTCTATCTGGGGCTTTAAAGTAACAGTGCA

Function

symbol description
rab7a Predicted to enable GTP binding activity and GTPase activity. Acts upstream of or within endosomal transport. Located in late endosome. Is expressed in neural crest. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 2B. Orthologous to human RAB7A (RAB7A, member RAS oncogene family).

NR:

description
ras-related protein Rab-7a

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU156787 True 1019 lncRNA 0.45 2 35786347 35794477

Neighbor

gene id symbol gene type direction distance location
LOC103031744 LOC108271679,LOC108439739 coding downstream 3097 35777920 ~ 35783250 (-)
LOC103039425 NA coding downstream 17213 35761680 ~ 35769134 (-)
ruvbl1 ruvbl1,ruvb1 coding downstream 45884 35734597 ~ 35740463 (-)
c13h1orf74 NA coding downstream 62124 35721778 ~ 35724223 (-)
eif4enif1 eif4enif1 coding downstream 97215 35674639 ~ 35689132 (-)
LOC103035873 LOC108440479,LOC108271864 coding upstream 34405 35828882 ~ 35837962 (-)
ccdc36 NA coding upstream 50095 35844572 ~ 35848903 (-)
LOC103034932 eno1b,LOC108440571,LOC107721178,LOC107568188,LOC108271510,LOC107712086 coding upstream 87824 35882301 ~ 35889443 (-)
LOC103031425 LOC108440580,LOC107673588 coding upstream 113745 35908222 ~ 35919417 (-)
LOC103032599 frs3,LOC107584505,LOC107667350,LOC107568202,LOC107673473,LOC107721202 coding upstream 138889 35933366 ~ 35946834 (-)
G115976 NA non-coding downstream 39364 35746532 ~ 35746983 (-)
G115968 NA non-coding downstream 52626 35730737 ~ 35733721 (-)
G115959 NA non-coding downstream 69599 35716074 ~ 35716748 (-)
G115958 NA non-coding downstream 71278 35714561 ~ 35715069 (-)
G115957 NA non-coding downstream 72169 35713490 ~ 35714178 (-)
G116078 NA non-coding upstream 44357 35838834 ~ 35839036 (-)
G116089 NA non-coding upstream 86890 35881367 ~ 35881567 (-)
LOC111193771 NA non-coding upstream 98161 35892638 ~ 35898717 (-)
G116092 ppil1,LOC107667353 non-coding upstream 106775 35901252 ~ 35906002 (-)
G116076 NA non-coding upstream 136457 35930934 ~ 35933246 (-)
LOC103033855 oxtr,LOC107749620 other downstream 935195 34825836 ~ 34851152 (-)
G115681 emc3,LOC107584459,LOC107657885,LOC107667035,LOC101173295 other downstream 1263929 34520957 ~ 34522418 (-)
nprl2 nprl2,tusc4 other downstream 1570921 34210079 ~ 34215426 (-)
LOC103043026 grm7,LOC108271537,LOC108427575,LOC108272196,LOC107708172,LOC107569297 other downstream 1612497 33940870 ~ 34173850 (-)
G115468 LOC108427633 other downstream 2023109 33761275 ~ 33763238 (-)
G116068 myhz2,LOC108440470,LOC108443907,LOC107385141 other upstream 19144 35813621 ~ 35815322 (-)
LOC103034399 LOC108440553,LOC108271943,LOC107584416,LOC107721179 other upstream 75326 35869803 ~ 35880291 (-)
LOC103031109 uqcc2,cf125,LOC108440614,LOC107580205,LOC107667355,LOC106565356 other upstream 160632 35955109 ~ 35958818 (-)
LOC103028059 ghrl other upstream 262086 36056563 ~ 36062284 (-)
LOC103023810 NA other upstream 1227698 37022175 ~ 37031363 (-)

Expression


Co-expression Network