LOC103039425


Basic Information

Item Value
gene id LOC103039425
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 35761680 ~ 35769134 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022675735.1
CATCCGACCGGTTTCCTCGCGTGTGTTCCCGACCGTCACAGCGCTGAGGCTGCGGATGGAGCCCCGCTGGATGATGCACGCGCACTCCCCTCATCCTCAGGGCGCGCTGGACTGCCCGGACGTCTCCACGCGCCACGCCCACCAGGTAAACCATGGCCTTGTGTACCCGGAGCAGCACGGATCCTTACTGCCCCCGGATGAGCTGGACATGTTCCTCAGCCCCGTGGAGCATCAGGGAAACGCGTACTACCACGCGCACGCGCCTCAAACAAACTACCGAGTGCGCGCGGCCTACAATCCCGCATCAGCTCGTTTGACTGGTGGGTCACTGTACAGACCCCCTGTCATCCACACCCCACCGTTTTCCTGGATGGAGAGCTCGAGACCGGCTCCTCCAGCGCCCCAGCACGCGGCTCCCTGGACCCCGGCTTCTGTCTCTAAGTCGTGTCCGGTGTTCCCGGGCTCATATCCGCAGTCTTGCCGCCTGCCCACCGCACCGCCCACCGACACCTCAACCACTCTGCTGGACGGCCTGGATGCGGAGAGCTGCGGCCCGAGCGAGCGCGCGTGCGCCTATTACAGCCCGGAGAAACTGACAGGAACAGCCAGGAATAAACAGCGAGCAAACTCTgAGGGACGAGAGTGTGTTAATTGTGGGGCTACTTCCACTCCTTTGTGGCGGCGGGACGGCACCGGTCATTACTTGTGTAATGCTTGTGGACTCTATCACAAGATGAATGGCCAGAACAGACCTCTCATCAGACCCAAACGCCGGCTGtCTGCTGCCAGACGAGCAGGTACTTGCTGTGCTAACTGCCATACAGGCACCACAACACTGTGGAGACGAAATGCCAATGGAGAGCCTGTTTGCAATGCCTGTGGCCTTTACTACAAACTGCACAACatgaACCGTCCCCTTACAATGAAGAAGGAAGGAATTCAGACAAGAAACAGGAAAATGTCCAGCAAATCGAAACGAAGGAGAGTAGAGAACTCTCAGCATCTCACCAACATCATTCAGGACAAACCACTGACCTTTAACCAGATTACCAACATGTCACATCACTTCACCATGACTCCATCCATAGATTTACATTCAGCCTTTGGCCACACCCACCACACTAGCTTAGTTACTGCCATGGGCTGATACTTAGAACCTACGTTCTACACTGGTGCAAATgaacacatgcatttacacataaaacatttaaggaaGATCCACATATTCCAAGCTCTTTTGACTTATGGACTGGAATGTTTTGTGAAACTACACATTGAAGCTATTTAACTAAATGTTAACTAAATGTTTGcagtctttaatttttttataatcattGCCTGACTGTAAAATAAATTGCACTTTATCCTGAAAACTCCAGCAATACAATTGATTGGATTCAAGGGTTTGGTATGCATTCATTTATTGGGTATTTGGCTTTATTTAGGACCACCTATGCAAATACAATATTTACTGTGCAGTTTAAAAGGGAggtgtatttatgtttttat

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K17894 GATA2; GATA-binding protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022675735.1 True 1509 mRNA 0.51 5 35761680 35769134

Neighbor

gene id symbol gene type direction distance location
ruvbl1 ruvbl1,ruvb1 coding downstream 21217 35734597 ~ 35740463 (-)
c13h1orf74 NA coding downstream 37457 35721778 ~ 35724223 (-)
eif4enif1 eif4enif1 coding downstream 72548 35674639 ~ 35689132 (-)
patz1 patz1 coding downstream 88337 35663433 ~ 35673343 (-)
LOC103044858 tgfa,LOC107721172,LOC107712107,LOC107673622 coding downstream 115611 35627865 ~ 35646069 (-)
LOC103031744 LOC108271679,LOC108439739 coding upstream 8786 35777920 ~ 35783250 (-)
LOC103035873 LOC108440479,LOC108271864 coding upstream 59748 35828882 ~ 35837962 (-)
ccdc36 NA coding upstream 75438 35844572 ~ 35848903 (-)
LOC103034932 eno1b,LOC108440571,LOC107721178,LOC107568188,LOC108271510,LOC107712086 coding upstream 113167 35882301 ~ 35889443 (-)
LOC103031425 LOC108440580,LOC107673588 coding upstream 139088 35908222 ~ 35919417 (-)
G115976 NA non-coding downstream 14697 35746532 ~ 35746983 (-)
G115968 NA non-coding downstream 27959 35730737 ~ 35733721 (-)
G115959 NA non-coding downstream 44932 35716074 ~ 35716748 (-)
G115958 NA non-coding downstream 46611 35714561 ~ 35715069 (-)
G115957 NA non-coding downstream 47502 35713490 ~ 35714178 (-)
G116060 rab7a,LOC106563067,LOC105015198,LOC106567937,LOC107562649,LOC107665199 non-coding upstream 17213 35786347 ~ 35794477 (-)
G116078 NA non-coding upstream 69700 35838834 ~ 35839036 (-)
G116089 NA non-coding upstream 112233 35881367 ~ 35881567 (-)
LOC111193771 NA non-coding upstream 123504 35892638 ~ 35898717 (-)
G116092 ppil1,LOC107667353 non-coding upstream 132118 35901252 ~ 35906002 (-)
LOC103033855 oxtr,LOC107749620 other downstream 910528 34825836 ~ 34851152 (-)
G115681 emc3,LOC107584459,LOC107657885,LOC107667035,LOC101173295 other downstream 1239262 34520957 ~ 34522418 (-)
nprl2 nprl2,tusc4 other downstream 1546254 34210079 ~ 34215426 (-)
LOC103043026 grm7,LOC108271537,LOC108427575,LOC108272196,LOC107708172,LOC107569297 other downstream 1587830 33940870 ~ 34173850 (-)
G115468 LOC108427633 other downstream 1998442 33761275 ~ 33763238 (-)
G116068 myhz2,LOC108440470,LOC108443907,LOC107385141 other upstream 44487 35813621 ~ 35815322 (-)
LOC103034399 LOC108440553,LOC108271943,LOC107584416,LOC107721179 other upstream 100669 35869803 ~ 35880291 (-)
LOC103031109 uqcc2,cf125,LOC108440614,LOC107580205,LOC107667355,LOC106565356 other upstream 185975 35955109 ~ 35958818 (-)
LOC103028059 ghrl other upstream 287429 36056563 ~ 36062284 (-)
LOC103023810 NA other upstream 1253041 37022175 ~ 37031363 (-)

Expression


Co-expression Network