patz1 (patz1)


Basic Information

Item Value
gene id patz1
gene name patz1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 35663433 ~ 35673343 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254330.3
tcttctttagggGGGAGGGGTGTGAAAGGGGGAGGGGGCTCACTGGAAAACAAGGATGTGAATTCATAACGGCCCGGCGGGCGGGGGGGGTTTAGAAACCAGGAAGATGAACAATGTGTAAAAAACGTAGAGTATAAAGCTTTATTCCGATTGAGCGAAGGAGCCGCTAACGCGGGCAAAGCGCGCCGGGTGTGCGCGGCACTGACACGAAGcgaattcattcatttttccctGCGGgcgagaaaacaaaacaaggacGGACACCCCCCCCCTCCAAATAAAGGGTAAAGTTCACAGGAAGCTGGGGGGCTGCCATTTTTTCGCCTTGCTAACATGTTAGATGCTAAAGCGGAGAGGGGTGCTCGCCGTTAGAAAGGAAAAAACGCTGTTTTTGTCGGGTTTGTCTTCAGCCTGGGCGCCGGCTGGTTTCTCGCAGCGCTTTGTCCTATGCATTAGGTGTTCGCTGTCTGAACGCGGGCGGTATGGAGAGGACCGAGCAGCCGTGGAATTCATCCTACACGTACCAGGTGAGCAAGCACAGCGCCGAGATGCTCCACAACCTTAACAGCCAGAGAAAAGATGGAGGCAGGTTCTGCGACGTGATCCTGCGCGTCGGCGAGGAGAGCTTCCCCGCGCACAAGGCCGTGCTGGCGGCATGCAGCGAGTACTTCGAGTCGGTGTTCAGCTGTCCGGCGGAGGGCGACGACGGCGAGGGCAAGGAGCTGGAGATGCACACCATAAACCCCAAGGTTTTCCGCGACATCCTGGACTTCGCGTACACCTCGCGGATCGTGGTGCGCCTCGAGTGCTTTCCGGAGCTCATGACGGCTGCCAAGTTCCTGCTCATGCGCTCCGTCATCGAGATATGCCAGGAGGTGATCAAGCAGTCCAACGTGCAGATTCTCGTCCCTCCTTCgcggggaggaggaggaggcggaggggAGCACAGCTTTCCCCGCGCCGCCAACAACTCTAACGCCGCCAACCACGACCTGTCAAACCCACCGCATTTATTGGACGTGGCTAACGGCGCCGTGTTCGCTGATCCCGGGCCGCCGCGGTGCGTTGTTGTTGACCGGGACGACGTTGTCGGAGATGCGGGAGCTGCTAGCGACGGCTCCCTCGCGGCTATGCTGCCGGCTAGCAGGCCACCCGTACCCGTGTCTCCGTTACACCTCGTCTCGGGAAGAAACCCCGTCAACGGCGAGGCTTCTCCGGGCTCTAAACGAGGCAGGGGGAGACCGAAGAAAGAACCGACTGCTGCTTCCTCCGACTATGGCAACAATAATAACACTCACCACGGCGATGCTAACGAAAGCGAAGGGCTGTTAGCATGCTCCATCTGCGGGAAGATGTTTACAGACGCGGCTCAACTGCGGAGCCACGAGGCGGAGCACGGAGCTTTCGGTGGCGGAGGTatcagtggtggtggtggaggaggagcagGAAGAGAGCTGCTGGTCCCCCCCGCGGACCTGGCCCCAGCGGTCGCCCCGCAGGTGATCCACACACAAGCAGGGCCGCACGAAAACGGGCTGCCCCCgccgccaccaccaccaccaccaccacacagcGCCGCCGACGGCCACCGCAAGCGGGAGCGGACGCGCAGGCATGTGGGCTGCGATCTCTGCGGGAAAGTCTTCAGAGACGTGTACCATCTCAACCGGCACAAGCTGTCACATTCCGGGGAGAAGCCGTACGCTTGCCCCGTGTGCGGCCTGCGCTTCAAGCGTAAGGACAGGATGTCTTACCACGTCCGCTCTCACGACGGCTCCGTGGGAAAACCCTACGTGTGTCAGAGCTGCGGGAAGGGCTTCTCCAGGCCAGATCACCTAAATGGACATATAAAACAGGTACACACAACAGAAAGACCTCATAAATGCCAGATTTGCAATGCATCATTTGCAACAAGGGATCGTCTTCGATCACACCTGGCATGCCATGAGGATAAAATACCATGCCAAGTATGTGGAAAGTTCTTACGGGCTGCCTACATGACAGACCACCTGAAGAAACACAGCGATGGACCTCACAACTACTGCAACATATGCAATAAAGGTTTTTCTACTGCGTCCTACCTAAAGGTACATGTAAAAACGCACCATGGCTCCTCCATGCTCCCTCCTTCCACAGCTCATCAGTTCCTAGAGCCGCGGGCCAATGGGCCGCAGACACACAACGGCACTCCCTACAGCTCTGGACGCCAGTGCGCAGTGGAAGACCTTTGCGCCAGTCGTCGGCTCCTGGTTACCTTTCCTGAGACAGAAGGGTCGTTTCGGGGGCTTTCTGGGCCTCCGGTTCTCCCCCAGCCAGGCCCGCCTGCCCTTGGTTTGCAGCCTGAGTTGCTCCTAGGCAAGCCAGGGACGACTCCCTATTTCTGGGAGTGCCGCTCTGCTGGAGCACCAGGCTTCCCGCTCCATGGGCCTCTGGCAGACGGGCAggagaatgctgggaaatgcCACCATCAGGATTCTGATGGTTCAGACGCTGCGTTTGGGGAACTCTCGAACGGGACAGAGCTGAAGCACGAGCATAAAGCAGAAGGTGAGGAGCTAGAGGTGACTTCTCTGATCTTCAATGGGGAGGCTGATGGCCCAGCGGCGACACCCTGCAGCTCCAAGCAAAAAACGGACCCAGAAAAGAAGTTTGCCTGTGGCGAATGTGGCCAGACCTTCCGCACAAAGTCTTACCTCAACAAGCACCACCAGCGGGTGCATAAGAAACACAGTGGGACGGGGTCCAGCCTTGGGGATCTGGGCTCGCCCTTTTCGCCCCAACAGAACATGTCGCTACTGGAGTCGTTTGGGTTTCAGATCGTCCAATCAGCTTTCGCCTCTTCACTAGTGGACTCTGAGGTTGGGAGCAGTGTTATGGGTTTAGGAGACAAGTGACTCTCTTGTGAAAGAGATATGTTTGTACTTTCTGGACTGCCACAAGTTTGAGTTACTGCTTTTCTACTTTTCATCAGTGTCATCGTAGACTACTTTGTCTTTTGTGTTTCATACCGTCGACTTGTTTTTGTCAGTTTGAACGTACATGTTTGCCAATATGTATTCCATTCTGTTTTCTCGTTGGCGCGATTTCAGCTAACTACCTTCTCCATTTCCTGTGTCATAGTTTGTTCCAGAGATTAAGTCGAGCCACTGGTGGTTTGGGCTGTTAGACTAATGTTAACACAATTGAATTCTTGATTTTTTAGCTTGACAACCTTTCAGCTGCTGAGGCTGATCATTAGACTTAAGACGATTATTGGgttaaaaaaatctcaataacCCTGCCTGTCTAAAGTCATTAAGTTTAATCATCATTAATCACTTAAATTTAATCCACACCTGCTATtgctacttttattttaattttattttgcatcATGGATACTTGCCAGAAGGATTGTTTTGGGTTACATGACAGTGCATGTGAGTTTTGAATATTCAGCAGGGACCAATTTCAGGTATGACTGTAAGATATTGCAAGAAATGAAGagtatattttattaacttaTTGATATTAGTGTCCCAGTCTTCTTTATGAAATGGTTTATATAAAGTTGTTCAGATTTAGATTTGTGCTGTGCTGGTATTTCTTTGAGCTGTATGTCTGACAAGAGGCCCGCAAAAGAGcttctgtatgtatgtgtgttttttttttttttttttttttgtgtatgtgaggtgtgtttgtgagtgagagagagacagcttgattgttttgtgtgtttgtgtgtgcaccTGGTCTCTTTATCTTCAGAATGTAATATAATCAGAgggcttttttttaatatatcagatttttttctatgATGTTTCTATACATTCCTGCTTAACTTAAGAGTTCCTATCATGACATGTGTATAATGTTCACACAcgtaaaaaatgtgtatatat
>XM_007254331.3
ttctttagggGGGAGGGGTGTGAAAGGGGGAGGGGGCTCACTGGAAAACAAGGATGTGAATTCATAACGGCCCGGCGGGCGGGGGGGGTTTAGAAACCAGGAAGATGAACAATGTGTAAAAAACGTAGAGTATAAAGCTTTATTCCGATTGAGCGAAGGAGCCGCTAACGCGGGCAAAGCGCGCCGGGTGTGCGCGGCACTGACACGAAGcgaattcattcatttttccctGCGGgcgagaaaacaaaacaaggacGGACACCCCCCCCCTCCAAATAAAGGGTAAAGTTCACAGGAAGCTGGGGGGCTGCCATTTTTTCGCCTTGCTAACATGTTAGATGCTAAAGCGGAGAGGGGTGCTCGCCGTTAGAAAGGAAAAAACGCTGTTTTTGTCGGGTTTGTCTTCAGCCTGGGCGCCGGCTGGTTTCTCGCAGCGCTTTGTCCTATGCATTAGGTGTTCGCTGTCTGAACGCGGGCGGTATGGAGAGGACCGAGCAGCCGTGGAATTCATCCTACACGTACCAGGTGAGCAAGCACAGCGCCGAGATGCTCCACAACCTTAACAGCCAGAGAAAAGATGGAGGCAGGTTCTGCGACGTGATCCTGCGCGTCGGCGAGGAGAGCTTCCCCGCGCACAAGGCCGTGCTGGCGGCATGCAGCGAGTACTTCGAGTCGGTGTTCAGCTGTCCGGCGGAGGGCGACGACGGCGAGGGCAAGGAGCTGGAGATGCACACCATAAACCCCAAGGTTTTCCGCGACATCCTGGACTTCGCGTACACCTCGCGGATCGTGGTGCGCCTCGAGTGCTTTCCGGAGCTCATGACGGCTGCCAAGTTCCTGCTCATGCGCTCCGTCATCGAGATATGCCAGGAGGTGATCAAGCAGTCCAACGTGCAGATTCTCGTCCCTCCTTCgcggggaggaggaggaggcggaggggAGCACAGCTTTCCCCGCGCCGCCAACAACTCTAACGCCGCCAACCACGACCTGTCAAACCCACCGCATTTATTGGACGTGGCTAACGGCGCCGTGTTCGCTGATCCCGGGCCGCCGCGGTGCGTTGTTGTTGACCGGGACGACGTTGTCGGAGATGCGGGAGCTGCTAGCGACGGCTCCCTCGCGGCTATGCTGCCGGCTAGCAGGCCACCCGTACCCGTGTCTCCGTTACACCTCGTCTCGGGAAGAAACCCCGTCAACGGCGAGGCTTCTCCGGGCTCTAAACGAGGCAGGGGGAGACCGAAGAAAGAACCGACTGCTGCTTCCTCCGACTATGGCAACAATAATAACACTCACCACGGCGATGCTAACGAAAGCGAAGGGCTGTTAGCATGCTCCATCTGCGGGAAGATGTTTACAGACGCGGCTCAACTGCGGAGCCACGAGGCGGAGCACGGAGCTTTCGGTGGCGGAGGTatcagtggtggtggtggaggaggagcagGAAGAGAGCTGCTGGTCCCCCCCGCGGACCTGGCCCCAGCGGTCGCCCCGCAGGTGATCCACACACAAGCAGGGCCGCACGAAAACGGGCTGCCCCCgccgccaccaccaccaccaccaccacacagcGCCGCCGACGGCCACCGCAAGCGGGAGCGGACGCGCAGGCATGTGGGCTGCGATCTCTGCGGGAAAGTCTTCAGAGACGTGTACCATCTCAACCGGCACAAGCTGTCACATTCCGGGGAGAAGCCGTACGCTTGCCCCGTGTGCGGCCTGCGCTTCAAGCGTAAGGACAGGATGTCTTACCACGTCCGCTCTCACGACGGCTCCGTGGGAAAACCCTACGTGTGTCAGAGCTGCGGGAAGGGCTTCTCCAGGCCAGATCACCTAAATGGACATATAAAACAGGTACACACAACAGAAAGACCTCATAAATGCCAGATTTGCAATGCATCATTTGCAACAAGGGATCGTCTTCGATCACACCTGGCATGCCATGAGGATAAAATACCATGCCAAGTATGTGGAAAGTTCTTACGGGCTGCCTACATGACAGACCACCTGAAGAAACACAGCGATGGACCTCACAACTACTGCAACATATGCAATAAAGACGGGCAggagaatgctgggaaatgcCACCATCAGGATTCTGATGGTTCAGACGCTGCGTTTGGGGAACTCTCGAACGGGACAGAGCTGAAGCACGAGCATAAAGCAGAAGGTGAGGAGCTAGAGGTGACTTCTCTGATCTTCAATGGGGAGGCTGATGGCCCAGCGGCGACACCCTGCAGCTCCAAGCAAAAAACGGACCCAGAAAAGAAGTTTGCCTGTGGCGAATGTGGCCAGACCTTCCGCACAAAGTCTTACCTCAACAAGCACCACCAGCGGGTGCATAAGAAACACAGTGGGACGGGGTCCAGCCTTGGGGATCTGGGCTCGCCCTTTTCGCCCCAACAGAACATGTCGCTACTGGAGTCGTTTGGGTTTCAGATCGTCCAATCAGCTTTCGCCTCTTCACTAGTGGACTCTGAGGTTGGGAGCAGTGTTATGGGTTTAGGAGACAAGTGACTCTCTTGTGAAAGAGATATGTTTGTACTTTCTGGACTGCCACAAGTTTGAGTTACTGCTTTTCTACTTTTCATCAGTGTCATCGTAGACTACTTTGTCTTTTGTGTTTCATACCGTCGACTTGTTTTTGTCAGTTTGAACGTACATGTTTGCCAATATGTATTCCATTCTGTTTTCTCGTTGGCGCGATTTCAGCTAACTACCTTCTCCATTTCCTGTGTCATAGTTTGTTCCAGAGATTAAGTCGAGCCACTGGTGGTTTGGGCTGTTAGACTAATGTTAACACAATTGAATTCTTGATTTTTTAGCTTGACAACCTTTCAGCTGCTGAGGCTGATCATTAGACTTAAGACGATTATTGGgttaaaaaaatctcaataacCCTGCCTGTCTAAAGTCATTAAGTTTAATCATCATTAATCACTTAAATTTAATCCACACCTGCTATtgctacttttattttaattttattttgcatcATGGATACTTGCCAGAAGGATTGTTTTGGGTTACATGACAGTGCATGTGAGTTTTGAATATTCAGCAGGGACCAATTTCAGGTATGACTGTAAGATATTGCAAGAAATGAAGagtatattttattaacttaTTGATATTAGTGTCCCAGTCTTCTTTATGAAATGGTTTATATAAAGTTGTTCAGATTTAGATTTGTGCTGTGCTGGTATTTCTTTGAGCTGTATGTCTGACAAGAGGCCCGCAAAAGAGcttctgtatgtatgtgtgttttttttttttttttttttttgtgtatgtgaggtgtgtttgtgagtgagagagagacagcttgattgttttgtgtgtttgtgtgtgcaccTGGTCTCTTTATCTTCAGAATGTAATATAATCAGAgggcttttttttaatatatcagatttttttctatgATGTTTCTATACATTCCTGCTTAACTTAAGAGTTCCTATCATGACATGTGTATAATGTTCACACAcgtaaaaaatgtgtatatat

Function

symbol description
patz1 Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleoplasm. Orthologous to human PATZ1 (POZ/BTB and AT hook containing zinc finger 1).

NR:

description
TC1-like transposase

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG:

id description
K24383 PATZ1; POZ-AT hook zinc finger protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254330.3 True 3887 mRNA 0.52 6 35663433 35673343
XM_007254331.3 False 3510 mRNA 0.51 4 35663433 35673341

Neighbor

gene id symbol gene type direction distance location
LOC103044858 tgfa,LOC107721172,LOC107712107,LOC107673622 coding downstream 17364 35627865 ~ 35646069 (-)
LOC103047612 LOC103047612 coding downstream 60915 35594021 ~ 35602518 (-)
LOC103021335 LOC108413698,LOC108271732,LOC107584436 coding downstream 114224 35529612 ~ 35549209 (-)
LOC103021985 slc6a13l,LOC108436256,LOC108271591,LOC107673491,LOC107712076,LOC107567081,LOC105889172 coding downstream 167752 35480133 ~ 35495681 (-)
LOC103024468 cadpsb,LOC108271493,LOC108436257,LOC107673496 coding downstream 234474 35326230 ~ 35428959 (-)
eif4enif1 eif4enif1 coding upstream 1296 35674639 ~ 35689132 (-)
c13h1orf74 NA coding upstream 48435 35721778 ~ 35724223 (-)
ruvbl1 ruvbl1,ruvb1 coding upstream 61254 35734597 ~ 35740463 (-)
LOC103039425 NA coding upstream 88337 35761680 ~ 35769134 (-)
LOC103031744 LOC108271679,LOC108439739 coding upstream 104577 35777920 ~ 35783250 (-)
G115908 NA non-coding downstream 72896 35589071 ~ 35590537 (-)
G115905 NA non-coding downstream 81030 35574428 ~ 35582403 (-)
G115907 NA non-coding downstream 83232 35579388 ~ 35580201 (-)
G115904 NA non-coding downstream 84972 35576796 ~ 35578461 (-)
G115903 NA non-coding downstream 86902 35569183 ~ 35576531 (-)
G115956 NA non-coding upstream 38948 35712291 ~ 35712545 (-)
G115957 NA non-coding upstream 40147 35713490 ~ 35714178 (-)
G115958 NA non-coding upstream 41218 35714561 ~ 35715069 (-)
G115959 NA non-coding upstream 42731 35716074 ~ 35716748 (-)
G115968 NA non-coding upstream 57394 35730737 ~ 35733721 (-)
LOC103033855 oxtr,LOC107749620 other downstream 812281 34825836 ~ 34851152 (-)
G115681 emc3,LOC107584459,LOC107657885,LOC107667035,LOC101173295 other downstream 1141015 34520957 ~ 34522418 (-)
nprl2 nprl2,tusc4 other downstream 1448007 34210079 ~ 34215426 (-)
LOC103043026 grm7,LOC108271537,LOC108427575,LOC108272196,LOC107708172,LOC107569297 other downstream 1489583 33940870 ~ 34173850 (-)
G115468 LOC108427633 other downstream 1900195 33761275 ~ 33763238 (-)
G116068 myhz2,LOC108440470,LOC108443907,LOC107385141 other upstream 140278 35813621 ~ 35815322 (-)
LOC103034399 LOC108440553,LOC108271943,LOC107584416,LOC107721179 other upstream 196460 35869803 ~ 35880291 (-)
LOC103031109 uqcc2,cf125,LOC108440614,LOC107580205,LOC107667355,LOC106565356 other upstream 281766 35955109 ~ 35958818 (-)
LOC103028059 ghrl other upstream 383220 36056563 ~ 36062284 (-)
LOC103023810 NA other upstream 1348832 37022175 ~ 37031363 (-)

Expression


Co-expression Network