G115957


Basic Information

Item Value
gene id G115957
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 35713490 ~ 35714178 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU156670
CTGAGAAGCTGTTAGGAACTTGCGGGCGATCTTACGGTTATTCAGCCTCGTCACCACGCCTCTACCAGGGCCACGCCCAAGATTGCACTTCCTGAAATTGCTAAGTGGAGCACGAGTCCCATCTGTGCACAATAACCGGTACTCATCCTTCTCACTGTCTGTAAGGCCCCAAGATTTTAGAACAAATAGGAAGAGAAATTGGACAGAAAGGAAGGATGAGCAGAAGAACACTGAAACTGTTAAAATCGGGAATATTTAATTAAGTCTATTAAAGAAATGATCAGttattcaaatatttaacaACAAATATTAGCATCTCCACATACTTCACAGCTGTGCATTTGAATTTTTTAAACCTGCATGgaccaacatttaaaaatagaaccCATCATCTCCTGTTAGATTGCAAAACAATTAAAGAATGGCTATTCAAAAGGACATGTTAGTCAAAAAGGACACTAGTACTGTCAGGCAggtgaacagtgaacagtgaacTATGACTAAGAAGTTTAATGTTAGTTAGGCTATATTAGTAATAATTGCTTTAGAAATAGTAAGTGAAATGTGACAACAATGATTAGCTACTAGGTGAATGAAGCAGCATAAAGACCaggtacaaataaataaaaaaataagcatgtTTCTGTTAACCATCTATACTGTCCAGAACGGTGTGATCCACAAAAGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU156670 True 689 lncRNA 0.38 1 35713490 35714178

Neighbor

gene id symbol gene type direction distance location
eif4enif1 eif4enif1 coding downstream 24358 35674639 ~ 35689132 (-)
patz1 patz1 coding downstream 40147 35663433 ~ 35673343 (-)
LOC103044858 tgfa,LOC107721172,LOC107712107,LOC107673622 coding downstream 67421 35627865 ~ 35646069 (-)
LOC103047612 LOC103047612 coding downstream 110972 35594021 ~ 35602518 (-)
LOC103021335 LOC108413698,LOC108271732,LOC107584436 coding downstream 164281 35529612 ~ 35549209 (-)
c13h1orf74 NA coding upstream 7600 35721778 ~ 35724223 (-)
ruvbl1 ruvbl1,ruvb1 coding upstream 20419 35734597 ~ 35740463 (-)
LOC103039425 NA coding upstream 47502 35761680 ~ 35769134 (-)
LOC103031744 LOC108271679,LOC108439739 coding upstream 63742 35777920 ~ 35783250 (-)
LOC103035873 LOC108440479,LOC108271864 coding upstream 114704 35828882 ~ 35837962 (-)
G115956 NA non-coding downstream 945 35712291 ~ 35712545 (-)
G115908 NA non-coding downstream 122953 35589071 ~ 35590537 (-)
G115905 NA non-coding downstream 131087 35574428 ~ 35582403 (-)
G115907 NA non-coding downstream 133289 35579388 ~ 35580201 (-)
G115904 NA non-coding downstream 135029 35576796 ~ 35578461 (-)
G115958 NA non-coding upstream 383 35714561 ~ 35715069 (-)
G115959 NA non-coding upstream 1896 35716074 ~ 35716748 (-)
G115968 NA non-coding upstream 16559 35730737 ~ 35733721 (-)
G115976 NA non-coding upstream 32354 35746532 ~ 35746983 (-)
G116060 rab7a,LOC106563067,LOC105015198,LOC106567937,LOC107562649,LOC107665199 non-coding upstream 72169 35786347 ~ 35794477 (-)
LOC103033855 oxtr,LOC107749620 other downstream 862338 34825836 ~ 34851152 (-)
G115681 emc3,LOC107584459,LOC107657885,LOC107667035,LOC101173295 other downstream 1191072 34520957 ~ 34522418 (-)
nprl2 nprl2,tusc4 other downstream 1498064 34210079 ~ 34215426 (-)
LOC103043026 grm7,LOC108271537,LOC108427575,LOC108272196,LOC107708172,LOC107569297 other downstream 1539640 33940870 ~ 34173850 (-)
G115468 LOC108427633 other downstream 1950252 33761275 ~ 33763238 (-)
G116068 myhz2,LOC108440470,LOC108443907,LOC107385141 other upstream 99443 35813621 ~ 35815322 (-)
LOC103034399 LOC108440553,LOC108271943,LOC107584416,LOC107721179 other upstream 155625 35869803 ~ 35880291 (-)
LOC103031109 uqcc2,cf125,LOC108440614,LOC107580205,LOC107667355,LOC106565356 other upstream 240931 35955109 ~ 35958818 (-)
LOC103028059 ghrl other upstream 342385 36056563 ~ 36062284 (-)
LOC103023810 NA other upstream 1307997 37022175 ~ 37031363 (-)

Expression


Co-expression Network