G115958


Basic Information

Item Value
gene id G115958
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 35714561 ~ 35715069 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU156671
TAAGAAAAGAGAAATGATATTAGGAAGCATGTCAACTGATTGTGTGCTTTCTCCCAtactaataacaatattaaacacTTGTCTCAATATGTTACTCAGAGCATTTCTGTAAAGGACAGAACAGAGAGCAATAATAAAGAGAGCTGCAACAGGAGATAATAATTTACTCTTATTTATCAAATATTGACAATTCCTTCAGTATTATGCAAATATCCGGCAATATTATTCACACTAATAcactctttcttttattctgttGCTTTAATTATCTGAAATGCTGAggaaatgtttaatgttttgctacAATTGCCAACAATTAGCTTTGCCTTACTGGACCTTGATCTTCTCAATGCAGTCACTCATAGATGAGGCCCTTACACACACCAGAGGATCTGATTTAATACTGAGAGCCCACTGCTCACACTTCTTCTGTTCAGCATGACTAATACAGCACCACCTCACCACGCTGTCCTCCAGTGAACTGCCTAagcacacaaatgcacacacac

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: ankyrin-2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU156671 True 509 lncRNA 0.37 1 35714561 35715069

Neighbor

gene id symbol gene type direction distance location
eif4enif1 eif4enif1 coding downstream 25429 35674639 ~ 35689132 (-)
patz1 patz1 coding downstream 41218 35663433 ~ 35673343 (-)
LOC103044858 tgfa,LOC107721172,LOC107712107,LOC107673622 coding downstream 68492 35627865 ~ 35646069 (-)
LOC103047612 LOC103047612 coding downstream 112043 35594021 ~ 35602518 (-)
LOC103021335 LOC108413698,LOC108271732,LOC107584436 coding downstream 165352 35529612 ~ 35549209 (-)
c13h1orf74 NA coding upstream 6709 35721778 ~ 35724223 (-)
ruvbl1 ruvbl1,ruvb1 coding upstream 19528 35734597 ~ 35740463 (-)
LOC103039425 NA coding upstream 46611 35761680 ~ 35769134 (-)
LOC103031744 LOC108271679,LOC108439739 coding upstream 62851 35777920 ~ 35783250 (-)
LOC103035873 LOC108440479,LOC108271864 coding upstream 113813 35828882 ~ 35837962 (-)
G115957 NA non-coding downstream 383 35713490 ~ 35714178 (-)
G115956 NA non-coding downstream 2016 35712291 ~ 35712545 (-)
G115908 NA non-coding downstream 124024 35589071 ~ 35590537 (-)
G115905 NA non-coding downstream 132158 35574428 ~ 35582403 (-)
G115959 NA non-coding upstream 1005 35716074 ~ 35716748 (-)
G115968 NA non-coding upstream 15668 35730737 ~ 35733721 (-)
G115976 NA non-coding upstream 31463 35746532 ~ 35746983 (-)
G116060 rab7a,LOC106563067,LOC105015198,LOC106567937,LOC107562649,LOC107665199 non-coding upstream 71278 35786347 ~ 35794477 (-)
G116078 NA non-coding upstream 123765 35838834 ~ 35839036 (-)
LOC103033855 oxtr,LOC107749620 other downstream 863409 34825836 ~ 34851152 (-)
G115681 emc3,LOC107584459,LOC107657885,LOC107667035,LOC101173295 other downstream 1192143 34520957 ~ 34522418 (-)
nprl2 nprl2,tusc4 other downstream 1499135 34210079 ~ 34215426 (-)
LOC103043026 grm7,LOC108271537,LOC108427575,LOC108272196,LOC107708172,LOC107569297 other downstream 1540711 33940870 ~ 34173850 (-)
G115468 LOC108427633 other downstream 1951323 33761275 ~ 33763238 (-)
G116068 myhz2,LOC108440470,LOC108443907,LOC107385141 other upstream 98552 35813621 ~ 35815322 (-)
LOC103034399 LOC108440553,LOC108271943,LOC107584416,LOC107721179 other upstream 154734 35869803 ~ 35880291 (-)
LOC103031109 uqcc2,cf125,LOC108440614,LOC107580205,LOC107667355,LOC106565356 other upstream 240040 35955109 ~ 35958818 (-)
LOC103028059 ghrl other upstream 341494 36056563 ~ 36062284 (-)
LOC103023810 NA other upstream 1307106 37022175 ~ 37031363 (-)

Expression


Co-expression Network