LOC103040564 (LOC108443440,LOC108273224)


Basic Information

Item Value
gene id LOC103040564
gene name LOC108443440,LOC108273224
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 17514809 ~ 17552339 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022675490.1
tctctttctctcctccctctctgtaGTCCAGGCCGCCGGTGCCAGGAGTGGCTCGACCAGAGAGGCTGGGAGCCACAGAAGGAGCAGGACCTCCAGAGTTCCTTAAAAAGCCTCCCCCTCAAAGACGCTTCACCACAGGGGAGAAACAGAACAGCAGAATACACAAAAAGAGGTCCTGGACATCCTGGGAAATTAATTTTCTgtcaaaacagaagaaaaagagcAGAAGCTCTCAGACGTTATCGTTACTCGCATAACAGAGTGGCTGAGGAGGACCAATGGACTTCCGAGCGGCCCTCAAGCCCCGATCGGGGCCTAAAATGGGGTCAGAAATCAAGACAAGCACCCCAACCAAAGTGGACTTCAGGTCTGTACTGGGAAAAAAGGAAGGAGGCTCACCCAAACCAGCTCAGCCCAAGCCGGCCCCCAGCAGTTCACCTGCAGATTTTAGGTCCCTCCTCAACAAGAAGAAGACCGCTGAACCTGAAAAGGCGCAACCGCAAAAGAGTGCAAAAGAGCCGGTAGCTCCTGCTCCAGCGACGGGCACCAAACAGGACAAACAGAGCATCAATGGCGTGAATGGAGCAGTGGACAACAAACCACAAAACCAGCCAAAGACCAGCATAGTGGAGAAAGCaggaacagagaaaaagaaagatgttGACACTCCagaaaagaaaagcatcccAGCAGAGAAGCCAAGCCCGGAGAAGAAGAGCGATAGCGGGCAGGCCGAACCAAAGTCGCATCCAAACAAAATCACGGATGGAAGTATCAATCAGAAGAAGGATACCAGTGCGGATGGAAGTTCAGCAGAAAAGAAGAGCGTGCCCAACTCTGTGGACAGCAGAGACGGAGGAAAGAAAGGCTCTGGCAAAGAGCCCTCGTTCACACAGACTCTGAGTGATGTCACCGTTCTGGATGGAGAGAGACTGAGGTTAGAGTGCACAGTCACCTCTGACCCCCCGGCTGTCATCACCTGGTCACTGGAAGGGAAAGTTGTGAAGCCGTCAAAATTCATTGTCTTATCTCAGGAAGggGGAAAATGTTCACTCACCATAGACAAGGCTCTCCCAGAAGACGAAGGACGCTACACATGCAAGGCAGAGAACTCGGATGGAAAAGCTGAATGCTCGTGTATGGTCCAAGTGGACGATCCCTCAGATCCATCcgcagaaaaaaagaacaggaaAAGCTCATCTTCAGCAACTACAACAGAGAATGAAGccagaataaagaaaaagccAGCGCCAAAGTCTCCCACCAAACAGGGTTCTCCTCCCCAGGTTCTGCAGTTCCCTGGAGACCTGAAGATCCGAGCAGGAGAGAAGGTGGAGCTGCTGTGTAACTTCGGAGGCACTGCACCCATTACCTGCACCTGGCTCAAGTTCAAAAAGCCGATCCAGGCAGGAAGTGGAGGCGTTACCATAGAAACCAAGGAGAACAGCAGTCAGCTGACGATCGCAGCCAGTGATCAGGATCACTGTGGCTGCTACACGCTGGATCTGCAGAACAAATATGGCAGCAAGCAGACCTCTCTCAATCTCACTGTAGTAGATAAGCCTGATCCTCCGGCTGGGGTCCCGGCCGCTTCAGACATCCGCAAGTCCTCGCTCACCCTCTCCTGGTATGGACCTACGTATGATGGCGGCAGCATCGTCCAGTCGTACAACCTGGAGATCTGGAACTCGGTGGACGATAAGTGGACGGCGCTCACTTCCTGTAACAGCACCTCCTACCACATCCAGGAGCTGCTCTCCGACCGGCAGTACAAGTTCCGCGTACGAGCCGTTAACATGTACGGCATTGGAGAACCGAGTGCTGAGTCAGAACCTGTCACTGTGGGCGTACAGGTAGAACCAGagaaaaaagaagaggaaacaGAGGCGGCTGTGTCTGATGACGATTCGGAGAAAGAACCAGAATACAGGGATGTGGTTATAAAGAAAGACTGCAGTGTAAAGGATTTCTACAGTGTGGAGGATCGCTTGGGCACGGGTAAATTTGGCCAGGTCTTTAAACTGGTGGAGAAATCTACAAAGAAGATGTGGGCTGGGAAGTTCATCAAGGCTTTCTCacagaaggagaaggagaacgTGCGGCAGGAGATCAGCATCATGAACAGCCTCCACCACCCCAAGCTGGTGCAGTGTGTGGATGCCTTCGAGGGCAAGTCCGACATTGTGATGGTGATGGAAATGATCTCTGGCGGTGAGCTGTTTGAGCGAATCGTAGACGAGGACTTTGAGCTGACCGAGCGCGAGGTCATTAAGTACATGCTCCAGATCATCGATGGTGTCCAGTTCATCCACAAACAGGGTATCGTGCACCTGGATCTCAAGCCAGAAAACATCATGTGCGTTAACAAGACTGGCAGCAAGATTAAACTCATTGACTTCGGTCTCGCGAGGAGGCTAGAGAACTCTGGTTCCCTCAAAGTTCTGTTTGGAACACCTGAGTTTGTGGCCCCGGAGGTGATCAACTATGAGGAAATTAGTTATCCAACAGATATGTGGAGCATCGGCGTCATCTGTTACATCCTGGTCAGTGGTCTCTCTCCATTCATGGGGGACAATGATAATGAAACCCTTGCTAATGTTACATCTGCAACCTGGGACTTTGAGGACGAGGCTTTTGATGAGATCTCAGAGCAGGCCAAGAATTTCATCAGTAGTCTACTCAAGAAAGATATGAAGGCCAGGCTGACCTGTGCCCAGTGCCTGGAGCACACCTGGCTTAAACAGGACACTAAGAACATGGAGGCTAAGCAGCTGTCCAAGGAGCGCATGAAGAAGTACATACTGAGACGCCGATGGCAGAAAACAGGAAACGCAGTGCGAGCCATTTCCAGATTCAGCTCCATGGGAATGCTAGCCGGTATTGGCCCAAAGAAAAGCCCAACAGAAGATAATAAACCAGAGAACCCCCCTGCTCCAGTCCTGGAGAGTGCTGAAGACGAGAACCATACCCCTGCAGCTCCAACCTTCTCCATGGTCATCCAGGatgtggaggtggtggagggcAGCGCTGCTCGCTTCGACTGCAAGATCGAGGGGTACCCAGATCCTGAGGTGGTGTGGTACAAGGACGACCAGCCCATCAAAGAGACACGCCACTTTCAGATCGACTATGAGGAGGACGGCCACTGCAGCCTGGTGATCTCTGAGGTGTGTCCCGACGACGACGCCAAGTACACCTGCAAGGCAGTCAACGGCTTAGGAGAGGCATCCTGCACCGCTGAACTGATGGTGGAGTTCatgcaggaggaggaaggagagggtgaggaagaggaggaggaagaagaggaagaagaagaggagtgAATAACGGAAAAAACGAGGACAAGATCAGAAGAAAGGATGAATGAAGGAAGGAATGGACGAGTGGATACTGTGGGAGGCTCAGAATCTTCTTAAAGCTTACGCTCTTTCGCTGCTGCTTTCGTTACAGAAGCAGCCTGTACGTTTTTCACTGATCTAAATATTTATTCACTTCTGTCTTTACAGTGCAAGTGCTGAAAGATGAAAAAACTGTTTGTATGAAATGGATGTTCATCAAGATCAAAGACATTCCAGGGTATGCTCGATTCCTGAGAACCAACAACAGCAGAACTCCAGCTTTTCCAAAAATGGACTGCTCACTTGAACTGCATGTCTGTCGGACGACCCCTTTGGTCCTTTGGCTTCTACATCTGGACTTTTGACGGTTTCCTGGGTTCATTTTTCTGTGGCATGCTTTTGGGGCAGACAATGCTATGTTAAATGCGTAGACACAAAatgaattatataattttattttcgcCAAACTTATCTTTACTTTAAAACACCAGGATCATCTTTCATAAGGGGCTGATAATGACCACATTGACATTAACCACATTACATGACAACAGCTAGCAGTTAGTTATTAGCCTAGCATTTACTCTGAATTGCTTGACATGTTTCTGCCTCCTCTCGCGCTGCCTTTGGTATTCCCTTATTTAGCTATCAGGCTAACGGCCATAGCTAACCTAGCACACAGCTTCTCACGCAGTCAGACTGAGAGAAGGGATTGTAGGTGATTTCTCAGGCCCCTCACCATTACACAGCTCTCAAGAGGGCTGTCCTCCTGCCTGCTTTACCAGAGTTACCTAGTGCAGTTAGTAGCAACATTATTATATAAAGGTGCTTTAAGTTTTGGTCAGGGAAgagttttatttttgcaatttttgtaaaaaagaattCTAATAATTTTGGGAACATAAATGTAACacacaaatgtaaatatgaaataCTACAAGCGATGGAGGCAACACAACGGCCAGAAGTCATTCGTTTTCAGTTATTAAAGTGACACCAGTAGTCAGCAAAAAAATCTCTCtcgtatccaaaaaacatggagaacttttttttattgttcaaaacagtatttaaatctgtatttttaaaggaaaatttcCCATCAAGATAAAAAAAGCATATTCTGAATAAGTTAACATGTAGCTATGATGAGTTGTGAAccttaaattaatacataaagccatatatattgtttttactgGTTTGCTCTACGAAACAGTTTAGCATACAACCTGCCTACTAGTCTATCGTCTGCTGCACGGGTGACGGAGAGCGATTTTATCGTGGTGTGCACGTAGGGCTAAGAGCATACTTTTCAGCCTTGTTGACATGGTTTGTAAATACATGTCAGTGTTTGCTTATTTAAcacgtttatttatttcacacaAACAGGTTTTCATTCCAGGTCtagaatggaaaaaaacatgttgtTTTCTGCCCCAAAGGCATGCTGTCCATGCCATCATCACTTATTTTATGAGACGGGTCACAGTGCTTGGACTACTCTTAATTGTctgtcatcttttttttttttacactttgttAAAGGTTTCCAGTAGTACAACACATTTTGTTTTCAAGGAAGGCATACAGatatcatataaaataaataaacaaagtctGTTCCAaagcattgaaaaaaaaacagtaaggtagaaaaataaaaagttaaataaaatcattGGCAGATGAAAGTGTAGGTAGaattttcaaataaatgtgCAAAACAATGCATATACAAGatctacacacaaaaacaattgAACATTGAGTCATCTGACGCTGGAGCTGCATCACTTGAGTGAATGAAGAACTTCCCTAAAAGTACCAATAACCTTATAGCATCATCTGACTGTCTacaatgtgttctttttttattttggtgcaCGTCTCACTGTTTCTACTCTGCACTGTAGCGCACTCTAGTGGTGCAACACTTTATTAtgcttttaaacactttaaacataGTTTAGCATGAGTTAGATTATTAGCCTTTTGGCCTGTGGCTTAAAGGCAACAGACACACTGGTGGAGACCTTACtgtataaaaacttttttattattattagatttttttgacaccagattttattatttttttttacctgagaATCGGTTTGGCAATGAGTGGGATTTTTAGTATTTGTCTAAATGAGTGAATGTTAGTTACATTTATCTGATGATCCCCGTCTTCTAAAATGCGTTCAGGGTAAAAATCCATGCAGCACACTTCAGCTGACTGGCCCAGGTTTGTCTGCGCTATTTCTGTTCAAAGCTTTGTTTGCCCTATTTTAGTTGACTTGCATGACAAAGCAGACTGGCATATCGAGGTAAAACTCGGTGTAGAAGGTCCCACTGCAGTCCTCATCTTTTATTTATGTCTTTGTACAGGCTTCTGCCGCCATGCTGCGTGTCTCTGAGTAGTCTCTGACAATGAATTAGTTATAGCTGTAGAACTCAAACTTCAGTTTGGTGAGTTTTTTCCACTTTGCATATTAAGACAGTAGTCCCTCACACTTCGGATCGTACTCCACATGCAGACAGACCCAGAAGTCTGGTTTGTGCATGAGACATTTACGCAAGCTTCATTGAGACGAAATGAAAAATCATGTCTAATGAACCATTACATGTTGTACTAGATTTTACACTTTATCACCAGTTTACAGTGGCCGCATCAATAAAAGTGATTTCCTCTCTCAa

Function

NR:

description
PREDICTED: myosin light chain kinase, smooth muscle-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022675490.1 True 6038 mRNA 0.46 17 17514809 17552339

Neighbor

gene id symbol gene type direction distance location
tbc1d23 tbc1d23,LOC107574489,LOC107752629 coding downstream 16286 17471835 ~ 17498523 (-)
bcl6 bcl6,LOC107752633 coding downstream 794685 16668516 ~ 16720124 (-)
trnap-cgg_2 NA coding downstream 1131512 16383226 ~ 16383297 (-)
trnap-ugg_4 NA coding downstream 1131971 16382767 ~ 16382838 (-)
trnap-ugg_3 NA coding downstream 1132673 16382065 ~ 16382136 (-)
chpf chpf coding upstream 336910 17889249 ~ 17910481 (-)
LOC103043861 LOC108437841,LOC107566327,LOC107705612,LOC107748546,LOC107566796,LOC107688845 coding upstream 439065 17991404 ~ 17999869 (-)
LOC103039642 des,desmb,LOC108437828,LOC107660100,LOC107705613,LOC107566324,LOC107566784 coding upstream 527019 18079358 ~ 18092036 (-)
LOC103040268 LOC108437831,LOC108272774,LOC107596329,LOC107660144,LOC107705618 coding upstream 621636 18173975 ~ 18183987 (-)
LOC103040586 LOC108437832 coding upstream 639339 18191678 ~ 18208990 (-)
G111746 NA non-coding downstream 13969 17499487 ~ 17500840 (-)
G111753 tp63 non-coding downstream 61689 17452033 ~ 17453120 (-)
G111703 NA non-coding downstream 182610 17331976 ~ 17332199 (-)
G111697 NA non-coding downstream 199314 17315289 ~ 17315495 (-)
G111696 NA non-coding downstream 202675 17311389 ~ 17312134 (-)
G111773 NA non-coding upstream 5968 17558307 ~ 17564953 (-)
G111774 NA non-coding upstream 7981 17560320 ~ 17564022 (-)
G111783 NA non-coding upstream 43579 17595918 ~ 17596567 (-)
G111790 NA non-coding upstream 76906 17629245 ~ 17629504 (-)
G111793 NA non-coding upstream 88720 17641059 ~ 17641259 (-)
G111664 NA other downstream 747504 16764687 ~ 16767305 (-)
G110969 NA other downstream 3653734 13860585 ~ 13861075 (-)
LOC103038496 gbg12,LOC103038496,LOC108271932,LOC105895117,LOC107705318,LOC107555383,LOC107564436,LOC108437694,LOC107678346 other downstream 4460937 12930798 ~ 13053872 (-)
LOC103045540 LOC108430857 other downstream 6536720 10949959 ~ 10978089 (-)
LOC107197509 NA other downstream 7976757 9523898 ~ 9538052 (-)
G111970 dnpep,LOC106575848 other upstream 551490 18103829 ~ 18104458 (-)
G112029 NA other upstream 1079862 18632201 ~ 18632860 (-)
G112125 NA other upstream 1672263 19224602 ~ 19225084 (-)
LOC103029406 LOC556764,LOC108424762,LOC105913225 other upstream 1914214 19466553 ~ 19479907 (-)
LOC103026630 LOC103026630,LOC108424735,LOC105910165,LOC105910166,LOC107705921,LOC107568399,LOC107676721 other upstream 2035695 19588034 ~ 19636446 (-)

Expression


Co-expression Network