LOC103029406 (LOC556764,LOC108424762,LOC105913225)


Basic Information

Item Value
gene id LOC103029406
gene name LOC556764,LOC108424762,LOC105913225
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 19466553 ~ 19479907 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU151673
ATAGGGGGCGGGTCTTCGGCCTTCAGCGAAGCAGTCGGACTCTGACAATTCGACGAATTGTTTATCGAATAAAGTTTACATTTAGATCaattttatttgaagaaaatcaAATAATTCGGTTGGTCGGTCGTTATTATTCGTGCATTGGTCGATTTTAGACTTGCAGCCGGATTTTCTGAGGAGCTTCACGATTGAGACAGTAGTTAATTTAgaatgctaagctaacagttagcaaaacaacaacaaacataaACCCAAACCCGAGTTCTCAGCTAAAAGTTGAgcttatttttaagtttattcattGTTATCACTTATAAagtgatatttattattttttctagttggtttactgaataatttacagtataaaaatatcaGTCGTTTAGTGGCTGGTTAATTAGTTAAATAGTTGCAGTGTGAAGTGGAGTTTGTGTACAATTCTGTAAAATGAGGGGAAGTTCCTCGTATGGCGATAGAGACCGAGATCGTGGACGCGACAGGGGGCCTCGTTTTGGGTCCAGCAGGGGGGGTCCTCCACCTCCTAAAAAGTTTGGGAATCCTGGAGATCGGCTGAGGAAGAAGAAATGGGATCTTGATGAGTTGCCTAAGTTTGAAAAGAACTTCTACAATGAGCACCTGGAAGTCCAGCGTATGACACAGtatGATGTGGAAGATttcagaagaaagaaagagatcaCTGTTAGAGGCTCTGGCTGCCCAAAACCAGTGACAAACTTTCACCAGGCGCAATTTCCTCGTGAGTAAACTGTAgacactcttatttttttatcaattgttTATTGTAGTATATGtgttttacatatacatatgtttTTAGAGCATAGTAATA
>XM_022675072.1
GCGGAATTCGGCACCACACTGGAGGATAGGGGGCGGGTCTTCGGCCTTCAGCGAAGCAGTCGGACTCTGACAATTCGACGAATTGTTTATCGAATAAAGTTTACATTTAGATCaattttatttgaagaaaatcaAATAATTCGGTTGGTCGGTCGTTATTATTCGTGCATTGGTCGATTTTAGACTTGCAGCCGGATTTTCTGAGGAGCTTCACGATTGAGACAGTAGTTAATTTAgaatgctaagctaacagttagcaaaacaacaacaaacataaACCCAAACCCGAGTTCTCAGCTAAAAGTTGAgcttatttttaagtttattcattGTTATCACTTATAAagtgatatttattattttttctagttggtttactgaataatttacagtataaaaatatcaGTCGTTTAGTGGCTGGTTAATTAGTTAAATAGTTGCAGTGTGAAGTGGAGTTTGTGTACAATTCTGTAAAATGAGGGGAAGTTCCTCGTATGGCGATAGAGACCGAGATCGTGGACGCGACAGGGGGCCTCGTTTTGGGTCCAGCAGGGGGGGTCCTCCACCTCCTAAAAAGTTTGGGAATCCTGGAGATCGGCTGAGGAAGAAGAAATGGGATCTTGATGAGTTGCCTAAGTTTGAAAAGAACTTCTACAATGAGCACCTGGAAGTCCAGCGTATGACACAGtatGATGTGGAAGATttcagaagaaagaaagagatcaCTGTTAGAGGCTCTGGCTGCCCAAAACCAGTGACAAACTTTCACCAGGCGCAATTTCCTCGTGAGtttgctctctctcctcaGTGTCTGGTTCTAGCTCCAACACGTGAGCTGGCCCAGCAAGTCCAGCAGGTGGCTTTTGACTACGGCAAGTCTTCTAGAATCAAGAGCACCTGTGTATACGGAGGAGCCCCTAAGGGTCCACAGATCAGAGATTTAGAGAGAGGTGTTGAGATCTGCATTGCCACACCTGGCCGTCTCATCGACTTCCTCGAGGCAGGAAAGACCAACCTGAGACGCTGCACTTACCTGGTGCTGGACGAAGCTGACCGCATGCTGGACATGGGCTTCGAACCACAGATACGCAAGATTGTAGATCAGATTCGGCCGGACAGACAGACGCTCATGTGGAGCGCTACCTGGCCGAAAGAGGTGCGTCAGCTGGCAGAGGATTTCCTCCGTGAGTATGTCCAGATCAACATCGGAGCTCTGGAGCTGAGTGCCAACCACAACATTCTGCAGATAGTGGACGTCTGTATGGAGAACGAGAAGGACAACAAACTGATTCAATTGATGGAGGAAATCATGGCAGAGAAGGAGAACAAGACCATCATCTTCGTCGAGACAAAGAAGCGCTGTGATGAGCTGACGCGCAGGATGAGGAGAGACGGGTGGCCAGCAATGTGCATCCATGGTGACAAAAGTCAGCCGGAGAGAGACTGGGTCCTGACAGAGTTCCGCAGTGGGAAAGCTCCGATCCTTATTGCTACTGATGTTGCCTCCCGTGGGCTGGATGTGGAAGATGTAAAGTTCGTCATTAACTACGACTATCCAAACTCTTCTGAGGATTACGTGCACCGCATCGGGCGCACAGCTCGCAGCACGAACAAAGGCACGGCCTACACTTTCTTCACTCCTGGAAACCTGCGCCAGGCCCGGGATCTGGTCCGAGTCCTGGAGGAGGCCCGGCAGGCCATCAACCCCAAACTTCTACAGCTGGTTGACTCGGGACGTGGGGGAGGAGGTGGTAGGATGCGTTATCGTGGCAGCGGCTCTAACGCCAACAACCCCAACCTCATGTATCAGGAGGAATGTGACCGGCGCATGCGCACTGTAGGAGGCAGTGGCGGCGGCAGCAAAGACAACCGCGGCAACAACTACAACAGAGACGGACGCACAGGTGGGGGAGGCCGTGATGACCGGTCTTCGTCCAATAACTCGTACAGGGACCGCAGCCGGGACACCCGTAACAACTACAACTCGGGCTCGTCCTACAGCGGAGGAGGGGGCGACCAGTATCAGGGTTACAGTGGCAGCGGAGGAGGCCAGTACAGCTCCAGAGGGGGCGGTTCCCAGTCAGGAGGTGGGAGTGGCGGAGGTGGGGGCCAGAACCCGCCTGGACCTGCTCAGGGTCCATTCGGACAGCCCCCACCCCCTCCTCCTCAGCCTGGGGCTGGTCCGCAGCCCCTGATGGCCCAGCAGTTTCCTCCACCTCCACAGCCAATGATGGGATTCATGGGCCCGGGCCCGTACTCATTCGCTCCTCCTCCGCCACCACCTCCACAACAGAGAAAGTAAAActtaagagtgagagaggggttCGGGAAACTGTCCACTGCCAGAGTGATGATGGAGCGCTGTCTTCTAGAATGCAGTGTCTTTCTGTATCTGTAGGCGTTTCTTTTGCCTCTGTTTGGATGAGGCTTTGGGCCTGATGATCTTAACAGGCCAACCCGTCCAGGGATTGTGGAGGAAAGGACTTTGCCAGTAAGATGTCCGCCATgccaaaagcagaaaaaaatatgctttgATTGCAGCTTTTTCCTGTTGTCTGTGGAAACAATGTCCTCTTGATGCGCCTCATTGTGTATATTATAATTCATCACAGATtgatagctttttttttctcgttttcATCAGTTCACATTGAGGTTGTGCTTACAGCTAATTAATTACCTTGTTACTCGCGCATGTAGCTCATTTTGTGGGTTTTGCTTTTAGCTATTGCATGTATTACATCGCATAGTAATTTCTTTTTTAGGCATGCAGATTCTTTTGGGCCCAgtacagaaagagacagaaaactGCTAAAACTGTATCAGTGGCATTCCTTTTTGTAAACACACCAGTGTTCTAGAGAAGCGAATGATCTAGTTTTGAATCTGTAtccttttaataaagtttttgatCTATAAATCAA

Function

NR:

description
probable ATP-dependent RNA helicase DDX17

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU151673 False 853 TUCP 0.39 3 19476483 19479882
XM_022675072.1 True 2924 mRNA 0.49 11 19466553 19479907

Neighbor

gene id symbol gene type direction distance location
micall1 micall1,LOC107716893,LOC107569466,LOC107710163,LOC107694909 coding downstream 20392 19408736 ~ 19446161 (-)
psmd12 psmd12 coding downstream 99619 19359344 ~ 19366934 (-)
tgfbrap1 tgfbrap1,LOC107596311,LOC107738304,LOC107688833,LOC107748533,LOC107660108 coding downstream 282164 19151478 ~ 19184389 (-)
LOC103041993 inpp4ab,LOC108437834,LOC108273053,LOC107566790 coding downstream 1112039 18288510 ~ 18354514 (-)
LOC103041078 cacnb4b,LOC108437833,LOC108272385,LOC107566792,LOC107688838,LOC107748538,LOC107705621,LOC107660102,LOC107596307 coding downstream 1184275 18232082 ~ 18282278 (-)
LOC103028781 LOC103028781,LOC108424728 coding upstream 9871 19489778 ~ 19496459 (-)
LOC103027619 NA coding upstream 62363 19542270 ~ 19546674 (-)
LOC103022889 LOC108424738 coding upstream 237662 19717569 ~ 19723342 (-)
LOC103047713 LOC108424741 coding upstream 292029 19771936 ~ 19785629 (-)
LOC103032470 LOC105013178,LOC103022087,LOC100712378,LOC107596217 coding upstream 351455 19831362 ~ 19833885 (-)
G112188 ppp1r12c non-coding downstream 79146 19381283 ~ 19387407 (-)
G112186 NA non-coding downstream 114817 19351487 ~ 19351736 (-)
G112184 NA non-coding downstream 130501 19314404 ~ 19336052 (-)
G112185 NA non-coding downstream 133089 19320936 ~ 19333464 (-)
G112128 NA non-coding downstream 216291 19245226 ~ 19250262 (-)
G112216 NA non-coding upstream 18196 19498103 ~ 19501588 (-)
G112265 NA non-coding upstream 125566 19605473 ~ 19711192 (-)
G112259 NA non-coding upstream 147467 19627374 ~ 19632417 (-)
G112281 LOC108424739 non-coding upstream 256420 19736327 ~ 19737230 (-)
G112390 keap1 non-coding upstream 476133 19956040 ~ 19959463 (-)
G112125 NA other downstream 241469 19224602 ~ 19225084 (-)
G112029 NA other downstream 833693 18632201 ~ 18632860 (-)
G111970 dnpep,LOC106575848 other downstream 1362095 18103829 ~ 18104458 (-)
G111763 NA other downstream 1942167 17523646 ~ 17524386 (-)
G111664 NA other downstream 2699248 16764687 ~ 16767305 (-)
LOC103026630 LOC103026630,LOC108424735,LOC105910165,LOC105910166,LOC107705921,LOC107568399,LOC107676721 other upstream 108127 19588034 ~ 19636446 (-)
G112280 NA other upstream 252697 19732604 ~ 19733373 (-)
zglp1 NA other upstream 354501 19834408 ~ 19842292 (-)
LOC103032158 LOC108424749,LOC108273301 other upstream 576264 20056171 ~ 20094326 (-)
trnae-uuc_17 NA other upstream 616033 20095940 ~ 20096011 (-)

Expression


Co-expression Network