G112185


Basic Information

Item Value
gene id G112185
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 19320936 ~ 19333464 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU151637
ggcggttgctaaggtgttgctaggtggttgctaaggtgttgctaggcggttgctaaggtgttgctatggtatccagggtggttgctaaggtgttgctaggtggttgctaggtggttgctagggtgttgctaggcggttgctaaggtgttgctatggtatccggggtggttgctaaggtgttgctaggtggttgctaggtggttgctaaggtgttgctaggcggttgctaaggtgttgctatggtatccg
>TU151638
aagtggttgctaggtggttgctaaggtgttgctaggcggttgctaaggtgttgctatggtatctggggtggttgctaaggtgttgctaggtggttgctaggtggttgctagggtgttgctaggcggttgctaaggtgttgctatggtatccggggtggttgctaaggtgttgctaggtggttgctaggtggttgctaaggtgttgctaggcggttgctaaggtgttgctatggtatccg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU151637 True 249 lncRNA 0.53 3 19320936 19329196
TU151638 False 239 lncRNA 0.52 4 19320936 19333464

Neighbor

gene id symbol gene type direction distance location
tgfbrap1 tgfbrap1,LOC107596311,LOC107738304,LOC107688833,LOC107748533,LOC107660108 coding downstream 136547 19151478 ~ 19184389 (-)
LOC103041993 inpp4ab,LOC108437834,LOC108273053,LOC107566790 coding downstream 966422 18288510 ~ 18354514 (-)
LOC103041078 cacnb4b,LOC108437833,LOC108272385,LOC107566792,LOC107688838,LOC107748538,LOC107705621,LOC107660102,LOC107596307 coding downstream 1038658 18232082 ~ 18282278 (-)
LOC103040586 LOC108437832 coding downstream 1111946 18191678 ~ 18208990 (-)
LOC103040268 LOC108437831,LOC108272774,LOC107596329,LOC107660144,LOC107705618 coding downstream 1136949 18173975 ~ 18183987 (-)
psmd12 psmd12 coding upstream 25880 19359344 ~ 19366934 (-)
micall1 micall1,LOC107716893,LOC107569466,LOC107710163,LOC107694909 coding upstream 75272 19408736 ~ 19446161 (-)
LOC103028781 LOC103028781,LOC108424728 coding upstream 156314 19489778 ~ 19496459 (-)
LOC103027619 NA coding upstream 208806 19542270 ~ 19546674 (-)
LOC103022889 LOC108424738 coding upstream 384105 19717569 ~ 19723342 (-)
G112128 NA non-coding downstream 70674 19245226 ~ 19250262 (-)
G112126 NA non-coding downstream 80664 19240057 ~ 19240272 (-)
G112107 NA non-coding downstream 184703 19135119 ~ 19136233 (-)
G112100 NA non-coding downstream 189178 19113071 ~ 19131758 (-)
LOC111193739 NA non-coding downstream 238151 19070606 ~ 19082785 (-)
G112186 NA non-coding upstream 18023 19351487 ~ 19351736 (-)
G112188 ppp1r12c non-coding upstream 47819 19381283 ~ 19387407 (-)
G112216 NA non-coding upstream 164639 19498103 ~ 19501588 (-)
G112265 NA non-coding upstream 272009 19605473 ~ 19711192 (-)
G112259 NA non-coding upstream 293910 19627374 ~ 19632417 (-)
G112125 NA other downstream 95852 19224602 ~ 19225084 (-)
G112029 NA other downstream 688076 18632201 ~ 18632860 (-)
G111970 dnpep,LOC106575848 other downstream 1216478 18103829 ~ 18104458 (-)
G111763 NA other downstream 1796550 17523646 ~ 17524386 (-)
G111664 NA other downstream 2553631 16764687 ~ 16767305 (-)
LOC103029406 LOC556764,LOC108424762,LOC105913225 other upstream 133089 19466553 ~ 19479907 (-)
LOC103026630 LOC103026630,LOC108424735,LOC105910165,LOC105910166,LOC107705921,LOC107568399,LOC107676721 other upstream 254570 19588034 ~ 19636446 (-)
G112280 NA other upstream 399140 19732604 ~ 19733373 (-)
zglp1 NA other upstream 500944 19834408 ~ 19842292 (-)
LOC103032158 LOC108424749,LOC108273301 other upstream 722707 20056171 ~ 20094326 (-)

Expression


Co-expression Network