G112265


Basic Information

Item Value
gene id G112265
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 19605473 ~ 19711192 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU151753
attttgagATGGCATCTGTACTAATTAGAGAGAAAACGACACAGAAGGCCAGACAGACAAGGGTAAAGAGATAAGAAAAAACagaacgagaaaaaaaaaagattttgtggcagaaaaaaaaaaccaggaTAACAGCGGAGAGACAACAAAATACAAGTAAGAGTGTCAACAAAGGAAGGCAACAACAGAGAAAAGAAGATAGACTgagggagaaacagagacagaaacagagaaggTGAGAGCATTCTCACCTTCACTAGTCACGCCATCACCGTCCTCAAAATCATGctgcaaaacacacattttacattagCTAGAACAATAAAAACCCATTACCACAGTCACACTGTGTTTAAGCTGTTTACTTAGACTGCACTGATTCTACCAGCCACTAGATGGAGCAAGTGCATCACTTCAGCCTCACATTCTGCTCAAATCTCTGAAATaagcagcagataaacagacTCAGTTCAGAAACAGattaaacagcagttttacCGTCTCTTCAGACAACCACTTCTCAATTTCAGTCATGGCAGCGGTCCGCGGTGCCGCCACCTGAGagacacaacacaacaaaacagcTCAGAGAACATgaacaaacataataaaatgtctGTTATGAAATTTACGACCCAACAGAATACataacactgtatataatacCACACAGTAGTGCTAAGCAATATGACTTTAAACAGTATCATGATCTCCTGAACATTTTAgcttaataatgattaataaataattattataatgaaCAACAGACACAGCGTAGCAATATACAGAATATTTTACATGGATAAGATTACAGTCAGTGAAGCATCTACATGCTTCTATGTAGAGATCTGCTATTTTAAGATAAAACTGTGTTTTGCTGATAATGTTTTGTTATGACAGGAACAATGTGCTGTCTGTGCTTTTGGTTCTATGGTGAAATCATGAGCAGGAACAGTGCAGCAATGCAACCTTGCGCTTAAACCTCATGCTATCTGTCGAGCATATCAAAAGGCTATGCATTTCACATTCAATGCAAATCACTGAGGGCCCGGTGTGAAAACATTCATCAACCCACAACAACAGAAGCCTGGAGGCACTCATACATTAGTTGTGTGTTATACAGTCCGTGTGCATTCTCTACAGACATTTATTTACATGACATTACACGTATAGGACACATATAgcacatatttattatttaacattttagatGCCCACAGGGCAGGGCATTATCCATCTACGGTTTGGTGTTTAAGCAGAGCTATCAGAGCAGTTGATCTACATAGAGACCACAGCTAGAAATTGTGAGGAGTTTGTATTGAGCCACACGAAAAGCAAAGCTAAATTCCAGATCAAAGAAAATTCCACTGAGCATATTTTATCTAGTATGGGAGTAACTCAGTCTTCAGTTCAGTTTCAACAGGTCAATTATTAAACCTCAGCAAATGATTCACAGATTCTAGGGTCAGTCAGGAATGTACAAGGCAAACAAACTCCCACAGTATTACTCCTTACTGCCACtgttcatagtttttttttttaaatctaataacaaaaattatataaatagtaTGTACAATGTATCTTTTCCAAATTACATATACAGCCCTGGACAAAATGAAGAgtacacttcagtttttgaatcagtctatttgattttgcaatttataggtttatgtttgagtaaaatgagcattgatgttttattttataatctacacacaacatttctcccaaattccaaataaaaatattgtcatttagagcatttatttgcagaaaatgagaaatagctaaaataacatGGTGCCAAGCTTTTAGgaatcaaataatgcaaagaagttcatattcttaaagttttaaaagttcagaaatcaatatttggtggaataaccctggtttttaatcacattttttatgcatcttggcttgttctcctcaaccagttttacacactgcttttggataactttatgcctctcctggtgcaaacatttaagcagttcagcttggtttgatggctcgtgatcatccatcttcctcttagttatattcaagaggttttcaatttggtaaaatcaaagaaactca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU151753 True 2091 lncRNA 0.36 2 19605473 19711192

Neighbor

gene id symbol gene type direction distance location
LOC103027619 NA coding downstream 58799 19542270 ~ 19546674 (-)
LOC103028781 LOC103028781,LOC108424728 coding downstream 109014 19489778 ~ 19496459 (-)
micall1 micall1,LOC107716893,LOC107569466,LOC107710163,LOC107694909 coding downstream 159312 19408736 ~ 19446161 (-)
psmd12 psmd12 coding downstream 238539 19359344 ~ 19366934 (-)
tgfbrap1 tgfbrap1,LOC107596311,LOC107738304,LOC107688833,LOC107748533,LOC107660108 coding downstream 421084 19151478 ~ 19184389 (-)
LOC103022889 LOC108424738 coding upstream 6377 19717569 ~ 19723342 (-)
LOC103047713 LOC108424741 coding upstream 60744 19771936 ~ 19785629 (-)
LOC103032470 LOC105013178,LOC103022087,LOC100712378,LOC107596217 coding upstream 120170 19831362 ~ 19833885 (-)
fdx1l fdx1l coding upstream 132333 19843525 ~ 19849310 (-)
cdkn2d cdkn2d coding upstream 281433 19992625 ~ 19996278 (-)
G112216 NA non-coding downstream 103885 19498103 ~ 19501588 (-)
G112188 ppp1r12c non-coding downstream 218066 19381283 ~ 19387407 (-)
G112186 NA non-coding downstream 253737 19351487 ~ 19351736 (-)
G112184 NA non-coding downstream 269421 19314404 ~ 19336052 (-)
G112185 NA non-coding downstream 272009 19320936 ~ 19333464 (-)
G112281 LOC108424739 non-coding upstream 25135 19736327 ~ 19737230 (-)
G112390 keap1 non-coding upstream 244848 19956040 ~ 19959463 (-)
G112407 NA non-coding upstream 309644 20020836 ~ 20036804 (-)
LOC107196873 NA non-coding upstream 416127 20127319 ~ 20225184 (-)
G112431 NA non-coding upstream 454531 20165723 ~ 20166932 (-)
LOC103029406 LOC556764,LOC108424762,LOC105913225 other downstream 125566 19466553 ~ 19479907 (-)
G112125 NA other downstream 380389 19224602 ~ 19225084 (-)
G112029 NA other downstream 972613 18632201 ~ 18632860 (-)
G111970 dnpep,LOC106575848 other downstream 1501015 18103829 ~ 18104458 (-)
G111763 NA other downstream 2081087 17523646 ~ 17524386 (-)
G112280 NA other upstream 21412 19732604 ~ 19733373 (-)
zglp1 NA other upstream 123216 19834408 ~ 19842292 (-)
LOC103032158 LOC108424749,LOC108273301 other upstream 344979 20056171 ~ 20094326 (-)
trnae-uuc_17 NA other upstream 384748 20095940 ~ 20096011 (-)
G112507 NA other upstream 560808 20272000 ~ 20317337 (-)

Expression


Co-expression Network