G112390 (keap1)


Basic Information

Item Value
gene id G112390
gene name keap1
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 19956040 ~ 19959463 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU151930
gcacagtactgtatatttctaCTTGGTgtcaaatacaattttattgaATTTGAATGTCTTTCTATGATTAAAAACACCTGAAGAGTTTGAAATTTCAGGTCATAAATGTCCATCAATAGCTAACCATTTCCCTTTTCACCTTCCCAATGTTGATCCACTCACCCGCGGGTGGATCCCCTCGATGGGCACCACCTCCATTCCGCACTCTTTCAGGCCGTTGGTGAACATGGCTCGAAAGACAGGTGAGGAGGACGCCAGCACCACCTTGTGTGCCACAAAGTCCACAGCCTCCAGGTCATTATACTTCACACGCAGAGTGACATCACACAGCTGCCTCTCAAGCCGCAACTCGTTCATGATGGCAAAGGCGGCGCCGGTGTGGCTCTCCAACGTGTAGCTGAAGATGCGATGGCCATTGCTTGTAGACGGTGTCACCTCCGCCTTGCACTCAGTCATTCCTGACGCCGCGTACATCCTCACCGGCGACTGCCGCCCAGCGTTCGCATCTTTGCTCGCCAGCTCAATGGCCAGACAGGGAAGAGTGTGCAGATGAACAAAGGATGGAGGTatcctttttttcctttaacccccACAACCTTTCAAGTCCCAGCCAAGTTATCTTAGCATTGGAAATGACAGAGGCAGCATTGAATTAGCTGTGCTAGGTGACAAACGTCAGGTCCTTGGGGAGAAGAGCTGCCTTCTTCCTTGTGACTAATTCCTACAAACAATTTTTCCAGTGATTGACAGTGTGCTAAAAGCACTACCTGTTGCAAGCTTGAAGTCCACGGGTCGACTCCATATCAACATGTAATTCACTGTCCTTTTATGATCTCAAAGAAACACGAGATGCATCTTTATTAGAAAGCCTAGGTGAACTTTTCACATTCTACTTCGAAACATAAACATCCTGCTGTTATGTAAGGATTATTAAGCAGGAAAAATCTTGAACTGTCTCCTACAGCCTTAGGTGAACTGGCTTTAAAATTAAGCAAGCCAGTTTGTAGTGCCCCAAGCACATTTAGGTTGCCAGTACAAACTGTTCTACTGGTGCAGAACACCAGAAAACACCCAAAGGCAaaaggaaaaaagcaaaaaaactaaggtcataaaacagacaaaaagagagTCTGCTCCTAAAGTGCCCTAAAAGGAGTTTTTCAATGAAAGTATAAGAACTCCTtgacttggaaaaaaaaataatttcctcTCGTTGTAGCATAAGGTTTTCTAGGTTAAAAGTCACCGTTTCACCTCCGTTTGTAAACTCGAAGTCTAGCCGACAGCCTGAAAGATTACAGACATTCAGGTCAGAAGGTGTGTGAAAGGTGCTAGAGGTTATTTAGCCTGTACAGACAATCTTCTCCAGGAAAACAGCACAGCTTTACACAGCTGATCCCGCCAGGACTGAAGGTCTTAAAAGTTCTGTGCCCTGGAATCTGTTTTCGTCTGCCGGTCGCTCAAagacctAGCGGTCTGTGCTgttccagacagacagacttatGTATCCTGGCAAAGCTCGAAAACACTCCTCAGCAGTGCACTCTGGTGAAGCACGGGCAGATGAATCACTTCCCACCGACTCAGCGTGCAACACGatgataaacaaagaaaatgcaCAGAAAAGTGCAGCTCTAACGAAACACAACGACTCGTTTTTGCAGTGCAAAGGTTTTAAGGTTGCTACTCACGCGTCTTGTGAGGATGAAGTCTGTCAGTGCTGACTAAAGGCCAGATGAGAGGAGAGGggggggacagagagagagcgcgaaGCAGTAAGTCACCATGACTAAGCACTGCGACCGACTAGCG

Function

symbol description
keap1 Predicted to enable disordered domain specific binding activity and identical protein binding activity. Involved in cellular protein metabolic process; cellular response to oxidative stress; and regulation of autophagy. Located in several cellular components, including centriolar satellite; inclusion body; and midbody. Part of Cul3-RING ubiquitin ligase complex. Implicated in gallbladder cancer. Biomarker of amyotrophic lateral sclerosis; idiopathic interstitial pneumonia; and pulmonary emphysema.

NR:

description
kelch-like ECH-associated protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU151930 True 1812 lncRNA 0.46 2 19956040 19959463

Neighbor

gene id symbol gene type direction distance location
fdx1l fdx1l coding downstream 106730 19843525 ~ 19849310 (-)
LOC103032470 LOC105013178,LOC103022087,LOC100712378,LOC107596217 coding downstream 122155 19831362 ~ 19833885 (-)
LOC103047713 LOC108424741 coding downstream 170411 19771936 ~ 19785629 (-)
LOC103022889 LOC108424738 coding downstream 232698 19717569 ~ 19723342 (-)
LOC103027619 NA coding downstream 409366 19542270 ~ 19546674 (-)
cdkn2d cdkn2d coding upstream 33162 19992625 ~ 19996278 (-)
ap1m2 ap1m2 coding upstream 38158 19997621 ~ 20008668 (-)
LOC103043840 LOC108424750 coding upstream 62958 20022421 ~ 20044388 (-)
c13h16orf45 cunh16orf45,c12h16orf45,clg09h16orf45,LOC103041783,LOC103355942,LOC101485480 coding upstream 183887 20143350 ~ 20190882 (-)
LOC103042289 mpv17l coding upstream 232399 20191862 ~ 20204689 (-)
G112281 LOC108424739 non-coding downstream 218810 19736327 ~ 19737230 (-)
G112265 NA non-coding downstream 244848 19605473 ~ 19711192 (-)
G112259 NA non-coding downstream 323623 19627374 ~ 19632417 (-)
G112216 NA non-coding downstream 454452 19498103 ~ 19501588 (-)
G112188 ppp1r12c non-coding downstream 568633 19381283 ~ 19387407 (-)
G112407 NA non-coding upstream 61373 20020836 ~ 20036804 (-)
LOC107196873 NA non-coding upstream 167856 20127319 ~ 20225184 (-)
G112431 NA non-coding upstream 206260 20165723 ~ 20166932 (-)
LOC111193743 NA non-coding upstream 237776 20197239 ~ 20199035 (-)
G112439 NA non-coding upstream 270283 20229746 ~ 20230011 (-)
zglp1 NA other downstream 113748 19834408 ~ 19842292 (-)
G112280 NA other downstream 222667 19732604 ~ 19733373 (-)
LOC103026630 LOC103026630,LOC108424735,LOC105910165,LOC105910166,LOC107705921,LOC107568399,LOC107676721 other downstream 319594 19588034 ~ 19636446 (-)
LOC103029406 LOC556764,LOC108424762,LOC105913225 other downstream 476133 19466553 ~ 19479907 (-)
G112125 NA other downstream 730956 19224602 ~ 19225084 (-)
LOC103032158 LOC108424749,LOC108273301 other upstream 96708 20056171 ~ 20094326 (-)
trnae-uuc_17 NA other upstream 136477 20095940 ~ 20096011 (-)
G112507 NA other upstream 312537 20272000 ~ 20317337 (-)
syngr1 syngr1 other upstream 499295 20458758 ~ 20555427 (-)
LOC103040822 LOC108429994 other upstream 1622282 21581745 ~ 21585479 (-)

Expression


Co-expression Network