G112507


Basic Information

Item Value
gene id G112507
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 20272000 ~ 20317337 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU152109
AATGTGGAATAGCtcaattctgaggaaaaaagtatggaatcactcaaattgaaggtagaaaataaggacacacccagtcaatttcctttccctaaatggacacctgcctcagattagatctgctcgttagtctgcagttaaaaacacctgcagtcatgacaccttggagggctgctggacgaattagagtggcaagaaccatggctccaacaagagaaatgtctcttgaaacaaaagagaggattgtgaaacttcttgaagaaggcaactcttcacgcatggttgctaaagatgtgggctgttcacagtcagctgtatccaagatatggaccaaatacaaacagcatggaatggttgttaaagccaagcgtactggtagaccgagaaagacatcaaagcgtcaagacaagcaacttaaggccatttgtcttgaaaaccgaaaaagtacaactaaacagatgaagcataaatgggaagaagctggagccaatgtatgtgaccgaaccgtaagaaatcgcctaaaggaaatgggatttcaatacaggaaagctaaaagaaaaccatcattgacacctaaacataaaagaacaagactgcagtgggctaaggagaggcaatcatggactgtggatgactggatgaaagttatcttcagtgatgagtcaagaatctgcattggacaaggtgatgatgctggaacttttgtttggtgccgttccagtgagatttatgaagaggcctgcctgaagaaaacaaccaaatttccacagtccttgatgatatggggctgcatgtcaggcaaaggcactggggagatgactgtggttaattcttctatcaatgcacaagtttacattgacattttggacagttttctcatcccttcaattgaacagatgtttggag

Function

GO:

id name namespace
GO:0006749 glutathione metabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU152109 True 906 TUCP 0.42 2 20272000 20317337

Neighbor

gene id symbol gene type direction distance location
LOC103042289 mpv17l coding downstream 67311 20191862 ~ 20204689 (-)
c13h16orf45 cunh16orf45,c12h16orf45,clg09h16orf45,LOC103041783,LOC103355942,LOC101485480 coding downstream 81118 20143350 ~ 20190882 (-)
LOC103043840 LOC108424750 coding downstream 227612 20022421 ~ 20044388 (-)
ap1m2 ap1m2 coding downstream 263332 19997621 ~ 20008668 (-)
cdkn2d cdkn2d coding downstream 275722 19992625 ~ 19996278 (-)
mgat3 mgat3,LOC103038268,LOC107705910 coding upstream 67150 20384487 ~ 20463595 (-)
tab1 tab1 coding upstream 153939 20471276 ~ 20493343 (-)
LOC103039925 cacng2,cacng2a,LOC107561356,LOC107680886,LOC107732897,LOC107729558,LOC107687643 coding upstream 244862 20562199 ~ 20642333 (-)
eif3d eif3d coding upstream 363325 20680662 ~ 20691319 (-)
LOC103042187 si:zfos-169g10.2,sstr3,LOC108424687,LOC107705906,LOC107666722,LOC107737981,LOC107555103 coding upstream 400309 20717646 ~ 20750401 (-)
G112439 NA non-coding downstream 41989 20229746 ~ 20230011 (-)
LOC107196873 NA non-coding downstream 46816 20127319 ~ 20225184 (-)
LOC111193743 NA non-coding downstream 72965 20197239 ~ 20199035 (-)
G112431 NA non-coding downstream 105068 20165723 ~ 20166932 (-)
G112407 NA non-coding downstream 235196 20020836 ~ 20036804 (-)
LOC111193746 NA non-coding upstream 55820 20373157 ~ 20376596 (-)
G112525 NA non-coding upstream 176712 20494049 ~ 20536792 (-)
G112538 NA non-coding upstream 240219 20557556 ~ 20558339 (-)
G112547 LOC103040247,LOC108424720,LOC107737982,LOC107666673 non-coding upstream 379847 20697184 ~ 20700123 (-)
LOC111193676 NA non-coding upstream 393572 20710909 ~ 20711988 (-)
trnae-uuc_17 NA other downstream 175989 20095940 ~ 20096011 (-)
LOC103032158 LOC108424749,LOC108273301 other downstream 177674 20056171 ~ 20094326 (-)
zglp1 NA other downstream 429708 19834408 ~ 19842292 (-)
G112280 NA other downstream 538627 19732604 ~ 19733373 (-)
LOC103026630 LOC103026630,LOC108424735,LOC105910165,LOC105910166,LOC107705921,LOC107568399,LOC107676721 other downstream 635554 19588034 ~ 19636446 (-)
syngr1 syngr1 other upstream 141421 20458758 ~ 20555427 (-)
LOC103040822 LOC108429994 other upstream 1264408 21581745 ~ 21585479 (-)
G112778 LOC103032844,LOC108430042,LOC108246801,LOC105893128 other upstream 1283907 21601244 ~ 21652734 (-)
LOC103026049 slc38a3b,slc38a3,LOC108411719,LOC107666102,LOC108271853,LOC107723914 other upstream 2058975 22376312 ~ 22430384 (-)
LOC111193749 NA other upstream 2156365 22473702 ~ 22477328 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G101521 NA non-coding NC_047600.1 CM018546.1 18793619 ~ 18794802 (-)
tiger barb (Puntius tetrazona) G81255 NA non-coding NC_056709.1 CM032078.1 12523853 ~ 12524317 (+)