G112547 (LOC103040247,LOC108424720,LOC107737982,LOC107666673)


Basic Information

Item Value
gene id G112547
gene name LOC103040247,LOC108424720,LOC107737982,LOC107666673
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 20697184 ~ 20700123 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU152153
ggcaactttattGGATGAagttggataaaaaaaaaaaacatcctcacTTTCAACAGAAGTCAGtgtaaagaaaatcataatGAATTGTTTTATGTAACATAAACAACAGCAGCCAGATTGACATTATGTCAAAGAAGGACATTTTTGTGTGACATTTACACAACATTACATGCTAATCCTGGCAGATGCTAtgagatttttttacatttgtatacATTCTCATGTAGCATTACAGCTGAAACTGCAATATCCAAAACATGTGATTTAGGGATTTGAGGTTATTCTGGATTTAAACAAGACTTGCAAGCAGCACAATTTAGGTGGAAAACAGAACTCAACTACTCATTCTTTAAACATATAGTCAGTGCTGACAGTGTACCCAACTTTGTACTTTGCAAATTTCACATTAGAAATGTTCACAATAGAACTGTGGAACTGGGCAGGGCTGAGGGAGGGTCGTGATTCTGCCTGTTTATTCCGGCACGGCGTCTCCAATCCACTTCAGGTAGGGTGGGTTTCCCTGGTCAATGGGAAAACTGATGACTTCAGCCACTTCATACGGATGATTGGACCTAACATATTCAGCCAGAGCGGGGATCTTCGTAGTTCTTGTCTTAATCATCAGCAAGAGTTCATTGTCTTCTTCAATCTTTCCCTGCCACTCATATACTGATGTGATTTTGGGTAGGATGTTTACACAGGCTGCCAGCTTCTTCTCCACAATACCTC

Function

NR:

description
protein CutA homolog isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU152153 True 729 lncRNA 0.39 4 20697184 20700123

Neighbor

gene id symbol gene type direction distance location
eif3d eif3d coding downstream 5865 20680662 ~ 20691319 (-)
LOC103039925 cacng2,cacng2a,LOC107561356,LOC107680886,LOC107732897,LOC107729558,LOC107687643 coding downstream 54851 20562199 ~ 20642333 (-)
tab1 tab1 coding downstream 203841 20471276 ~ 20493343 (-)
mgat3 mgat3,LOC103038268,LOC107705910 coding downstream 233589 20384487 ~ 20463595 (-)
LOC103036891 NA coding downstream 418955 20233929 ~ 20278229 (-)
LOC103042187 si:zfos-169g10.2,sstr3,LOC108424687,LOC107705906,LOC107666722,LOC107737981,LOC107555103 coding upstream 17523 20717646 ~ 20750401 (-)
fam83f NA coding upstream 147017 20847140 ~ 20868990 (-)
LOC103042502 NA coding upstream 171532 20871655 ~ 20891346 (-)
LOC103031880 LOC103031880,LOC108430001,LOC108272922 coding upstream 777979 21478102 ~ 21486266 (-)
LOC111193678 NA coding upstream 802883 21503006 ~ 21507152 (-)
G112538 NA non-coding downstream 138845 20557556 ~ 20558339 (-)
G112525 NA non-coding downstream 160392 20494049 ~ 20536792 (-)
LOC111193746 NA non-coding downstream 320588 20373157 ~ 20376596 (-)
G112439 NA non-coding downstream 467173 20229746 ~ 20230011 (-)
LOC111193743 NA non-coding downstream 498149 20197239 ~ 20199035 (-)
LOC111193676 NA non-coding upstream 10786 20710909 ~ 20711988 (-)
G112580 NA non-coding upstream 119316 20819439 ~ 20821014 (-)
G112587 NA non-coding upstream 134706 20834829 ~ 20835737 (-)
G112592 NA non-coding upstream 144680 20844803 ~ 20845983 (-)
G112607 NA non-coding upstream 186230 20886353 ~ 20886810 (-)
syngr1 syngr1 other downstream 141757 20458758 ~ 20555427 (-)
G112507 NA other downstream 379847 20272000 ~ 20317337 (-)
trnae-uuc_17 NA other downstream 601173 20095940 ~ 20096011 (-)
LOC103032158 LOC108424749,LOC108273301 other downstream 602858 20056171 ~ 20094326 (-)
zglp1 NA other downstream 854892 19834408 ~ 19842292 (-)
LOC103040822 LOC108429994 other upstream 881622 21581745 ~ 21585479 (-)
G112778 LOC103032844,LOC108430042,LOC108246801,LOC105893128 other upstream 901121 21601244 ~ 21652734 (-)
LOC103026049 slc38a3b,slc38a3,LOC108411719,LOC107666102,LOC108271853,LOC107723914 other upstream 1676189 22376312 ~ 22430384 (-)
LOC111193749 NA other upstream 1773579 22473702 ~ 22477328 (-)
LOC111193684 NA other upstream 1894289 22594412 ~ 22605138 (-)

Expression


Co-expression Network